Canis lupus familiaris (dog): 100686967
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Entry
100686967 CDS
T01007
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
cfa
Canis lupus familiaris (dog)
Pathway
cfa03030
DNA replication
cfa03410
Base excision repair
cfa03420
Nucleotide excision repair
cfa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cfa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
100686967 (LIG1)
03410 Base excision repair
100686967 (LIG1)
03420 Nucleotide excision repair
100686967 (LIG1)
03430 Mismatch repair
100686967 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cfa03032
]
100686967 (LIG1)
03400 DNA repair and recombination proteins [BR:
cfa03400
]
100686967 (LIG1)
Enzymes [BR:
cfa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
100686967 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
100686967 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
100686967 (LIG1)
DNA replication proteins [BR:
cfa03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
100686967 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
100686967 (LIG1)
DNA repair and recombination proteins [BR:
cfa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
100686967 (LIG1)
NER (nucleotide excision repair)
Other NER factors
100686967 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
100686967 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
DDR
PucR
Motif
Other DBs
NCBI-GeneID:
100686967
NCBI-ProteinID:
XP_005616429
Ensembl:
ENSCAFG00000004046
VGNC:
42673
LinkDB
All DBs
Position
1:107588229..107626678
Genome browser
AA seq
913 aa
AA seq
DB search
MQRSIMSFFYPKKEGKAKKPEKETSNSIRETEPPPKVALKERNGEVPESDSPVKRPGRKV
ARVLGSEGEEEDEALTPSKGQKPAPGSPQVSPPSPVTYPESSPSLSSTSPVDISAGIPKR
RTARKQLPKRTIQDVLEEQSKDEDREAKKKKEEEAETPPESLSESEVTQEKEAEGEDQPV
TSPEHRETSPEPPVDSTLEPAVSGKQEAQNEDLAKPPTRAPKTVSSFFAPRKPATKKEGK
EEDPGTPRQEETKGPLDPPSYNPAKNNYHPIDDACWKPGQKVPYLAVARTFEKIEEVSAR
LRMVETLSNLLRSVVALSPPDLLPILYLSLNRLGPPQQGLELGVGDGVLLKAVAQATGRQ
LDSVKAEAAEKGDVGLVAENSRSTQRLMLPPPALTAAGVFAKFRDIARLAGSASTAKKID
VIKGLFVACRHSEARFIARALSGRLRLGLAEQSVLAALAQAVSLTPPGQEFPPAVVDAGK
GRTAEARKTWLEEQGMILKQTFCEVPDLDRIIPVLLEHGLEHLPEHCRLSPGVPLKPMLA
HPTRGVSEVLKRFEEAAFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTGKYPDIISRI
PKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDAAEIQVQVCLYAFDLIYL
NGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDTDQIAEFLEQSVKDSCEGLMVK
TLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLAAYDE
ESEELQAICKLGTGFSDEELEEHYQRLQALVLPTPRSYVRVDGAVAPDHWLDPSAVWEVK
CADLSLSPIYPAARGLVDGEKGISLRFPRFIRVREDKKPEEATTSGQVACLYMKQSQIQN
QQGADLDSDSDFY
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggagtatcatgtcatttttctaccccaagaaggagggcaaagcgaaaaagcca
gagaaggagacctccaacagcatcagagagacagagccacccccaaaggtggcactgaag
gagcggaatggagaggtgcctgaaagcgattctccagtgaagaggccagggcggaaggtg
gcccgggtcctgggcagtgaaggggaggaggaggacgaagccctcacgccatccaaaggc
cagaaacctgccccaggctctccacaagtctcccctcccagccctgtcacatatcccgag
agcagcccttccctctccagtacctctcctgtggacatctcagcagggatcccaaagcgg
cgcactgctcggaagcagcttcctaagcggacaatacaggatgtcctggaagagcagagc
aaggatgaggacagagaggccaagaagaagaaggaagaagaagcagagaccccaccagaa
agcctgtcagaatctgaagtgacccaagagaaggaggcagaaggggaggaccaacctgtg
acatcccctgagcaccgagagacctccccagagcccccggtggatagcacgttggagcct
gcggtgtctgggaagcaggaggctcagaacgaggacttggctaagccgcccaccagagcc
cccaagacggtcagcagcttctttgccccgcggaaaccggcaaccaagaaagaagggaaa
gaagaggaccctggcactccaaggcaggaggagaccaagggacccctggaccctcccagc
tacaatcctgccaagaacaactaccatcccattgatgatgcatgctggaagccaggccag
aaggtcccttacctggctgtggcccggacatttgagaagattgaggaagtttctgctcgg
ctccggatggtggagacgctgagcaacttgctgcgctctgtggtggccctgtcacctccg
gacctccttcctatcctctacctcagcctcaaccgtcttgggccaccccagcagggtctg
gaacttggtgtcggtgatggtgttctcctcaaggcggtggcccaggccacagggcggcag
ctggactctgttaaggcagaggcagctgagaagggtgacgtggggctggtggccgaaaac
agccgcagtacccagaggctcatgctgcccccacctgctctcaccgctgccggggtcttc
gccaagttccgagacattgcccggcttgctggcagtgcctccacagccaagaagatagat
gtcatcaaaggcctcttcgtcgcctgccgccactcagaagcccgattcattgccagggcc
ctgagtggacggctgcgcctcgggctggcagagcagtcggtgctggctgccctcgcccag
gccgtgagcctcacgcccccaggccaagaattccccccggccgttgtggatgctgggaag
ggccggacagcagaagcccgaaagacgtggctggaggagcaaggcatgatcctgaagcag
acgttctgcgaggtgcccgacctggaccggatcatccctgtactgctggagcatggcctg
gagcacctccctgagcactgcaggttgagcccaggggttccactgaaaccaatgctggcg
caccccacccggggtgtcagcgaggtcctaaaacgttttgaagaggcagctttcacctgc
gagtacaaatacgatgggcagagggcacagatccacgttctggaaggtggggaggtgaag
atcttcagcaggaatcaggaagacaataccggaaagtacccagacatcatcagccgcatt
cccaagattaaactcccgtcagtcacgtctttcattctggacacagaagctgtggcatgg
gaccgagaaaagaagcagatccagccattccaagtgctcaccacccgcaaacgcaaggag
gtggatgcagcagagatccaggtgcaggtgtgtctatatgccttcgacctcatttacctc
aatggagagtccctggtacgtgagcctctttcccgacgccggcagctgctccgggagaac
tttgtggagacggagggcgagtttgtgttcgccacctccctggacaccaaggacacggac
caaattgccgagttcttagagcagtctgtgaaagactcctgtgaggggctgatggtgaaa
actctggacgttgatgccacctatgagatcgccaagagatcccacaactggctcaagctg
aagaaggactacctcgatggtgtgggcgacaccctggacctcgtggtgattggcgcctac
ctgggccgtggcaaacgggctggccgctatgggggcttcctactggctgcctacgacgag
gagagtgaggagctccaggccatatgcaagctcggaactggcttcagtgacgaggaactg
gaggagcactaccagaggctccaggccctggtgctgcccaccccacgctcctatgtccgg
gtcgacggtgccgtggcccccgatcactggctggaccccagtgccgtgtgggaggtgaag
tgtgcggatctgtccttgtcgcccatctaccctgctgcccggggcctggtggatggtgag
aaggggatctcccttcgctttcctcggtttatccgggtccgtgaagacaagaagccagag
gaggccaccaccagtggccaggtggcctgcctgtacatgaagcagagtcagattcagaac
cagcagggcgcggacttagactctgactcagatttctactag
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