Canis lupus familiaris (dog): 481031
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Entry
481031 CDS
T01007
Symbol
UPF3B
Name
(RefSeq) regulator of nonsense transcripts 3B isoform X14
KO
K14328
regulator of nonsense transcripts 3
Organism
cfa
Canis lupus familiaris (dog)
Pathway
cfa03013
Nucleocytoplasmic transport
cfa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cfa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
481031 (UPF3B)
03015 mRNA surveillance pathway
481031 (UPF3B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfa03019
]
481031 (UPF3B)
Messenger RNA biogenesis [BR:
cfa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
481031 (UPF3B)
mRNA cycle factors
P-body specific factors
481031 (UPF3B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
481031
NCBI-ProteinID:
XP_005641799
Ensembl:
ENSCAFG00000018426
VGNC:
48153
LinkDB
All DBs
Position
X:complement(77910224..77926190)
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AA seq
470 aa
AA seq
DB search
MKEEKEHRPKEKRVTLLTPPGASGSAGGASGDSTKGDDKQDRNKEKKEALSKVVIRRLPP
TLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL
DNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLESYAADNEKMTSTPET
LLEEIEAKNRELIAKKTTPLLSFLKNKQRMREEKREERRRREIERKRQREEERRKWKEEE
KRKRKDIEKLKKIDRVPERDKLKDEPKIKVHRFLLQAVNQKNLLKKPEKGDEKELDKREK
AKKLDKENLNDERASGQSCTLPKRSDGEPKDEKPRRPEEESGRDYRERDYERDQERILRE
RERLKRQEEERRRQKERYEKEKAFKRKEEEMKKEKEVVRDKGKKTESTESVGSSEKTEKK
EEVVKRDRIRNKDRPAMQLYQPGARSRNRLCPPDDSTKSGDSAIEKKQVS
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaggagaaggagcataggcctaaagagaagcgagtaaccctattgactcccccg
ggggcctcaggaagcgccggtggggcttcgggggacagcaccaaaggggacgataaacag
gatcgaaataaagagaagaaagaggcgctgagcaaggtggtaattcggagattacctccc
actttgaccaaggagcagcttcaggaacatcttcagcctatgccggagcatgattatttt
gagtttttttctaatgatactagtctgtatcctcatatgtatgccagagcatacatcaac
tttaaaaaccaagaggacattattttgttcagggatcgctttgatggttatgtattcctt
gacaataaaggtcaggaatatcctgctatagtagaatttgcaccttttcaaaaagctgca
aaaaagaagactaagaaaagagataccaaagttgggactatcgatgatgatccagaatat
agaaaatttttggaaagttatgctgcagataatgagaaaatgacatctactccagagaca
ctgctagaggaaatagaagcaaaaaatagagaattaatagctaaaaagacaaccccactt
ttgagcttcctgaaaaacaagcagagaatgagagaagaaaaaagagaagaaagaaggagg
cgagaaatagaaaggaaaagacaaagagaagaagagaggaggaaatggaaagaagaagaa
aaacgaaaaaggaaagatatagaaaagctaaagaagatagacagagttccagaaagggac
aaattaaaggatgaaccaaagattaaggtacacaggtttctgttacaagctgtgaatcag
aaaaatctactcaagaaaccagaaaaaggagatgaaaaagaattagacaaaagagaaaaa
gccaagaaactggacaaagagaatctgaatgatgaaagagccagtgggcagagttgtaca
ctgcccaagcgctctgatggcgaacctaaagatgaaaagcccaggaggcccgaagaggag
agtggcagagactacagggaacgggactatgagcgagaccaagagcgcatccttcgggag
agggagaggctgaagcggcaggaagaagagcgacgaaggcagaaggagcgctatgagaag
gagaaggcttttaaaagaaaggaagaagaaatgaaaaaagagaaagaagtggttcgggat
aaaggaaagaagactgaaagtacagaatcagtaggcagctcagaaaaaactgaaaagaaa
gaggaagtggttaaaagagatcgcataagaaacaaggatcgcccagcaatgcagctttac
caaccaggagctcgaagccgaaatcgactctgtccacctgatgacagcaccaagtctgga
gattcagcaatagaaaaaaagcaggtctcgtga
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