Canis lupus familiaris (dog): 607836
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Entry
607836 CDS
T01007
Symbol
UPF3A
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
cfa
Canis lupus familiaris (dog)
Pathway
cfa03013
Nucleocytoplasmic transport
cfa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cfa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
607836 (UPF3A)
03015 mRNA surveillance pathway
607836 (UPF3A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfa03019
]
607836 (UPF3A)
Messenger RNA biogenesis [BR:
cfa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
607836 (UPF3A)
mRNA cycle factors
P-body specific factors
607836 (UPF3A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
607836
NCBI-ProteinID:
XP_005634198
Ensembl:
ENSCAFG00000006504
VGNC:
48152
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All DBs
Position
22:61032216..61084507
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AA seq
475 aa
AA seq
DB search
MRSEKEGVGGPGAAVPGRGPSGRERQSAVGIQFRRESPWREAEAHPALSSGGGVGTGKPR
EEKTALSKVVIRRLPPGLTKEQLEEQLHPLPAHDYFEFFPADLSLYPHLYSRAYINFRNP
EDILLFRDRFDGYIFIDSKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSIEDDPEYKKFL
ETYCVEEEKPNTNPETLLGDIEAKTRELIARRTTPLLEYIRNRKLEKQRIREEKREERRR
RELEKKRLREEEKRKRREEERCKRKEADREKRAAEREVRIKLLKKPEKGEEPTEKPKERG
EEVDVGDGKQEMSLSYAVLKPMPLESSLEKPRKKSQNDSDKEQREMERRLRAKEPETQRC
HMDGSMHRAHSEFNRFARRNEEEPRWGKGVPPDRGKKGNQDSSIPVEAAEWPGREHKSEG
GLAPSMERPGNKDLPALQLYQPEAHIRAQESGGGISVEGRDGSRGEAEDLALAEE
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgcgctcggagaaggagggggtcggaggccctggggcggcagttcctgggcggggcccg
agcgggagggagaggcagtcggctgtgggaatccagttccgccgggagtcgccgtggcga
gaagcagaggcacacccagccttgtcctccggcggaggggtcggcacgggcaaacctcgc
gaggagaagacggctctgagcaaggtggtcatccggcggctgcccccgggcctcaccaag
gagcagctggaagagcagctgcaccccctgcccgcgcacgactacttcgagttcttcccc
gccgacctcagtctttatcctcatctctactcaagagcatacattaattttagaaatcct
gaggacatccttctttttagagatcgttttgatggctatatcttcattgacagtaaaggc
ctagaatatcctgcagtggtagaatttgccccattccagaagatagccaaaaagaagcta
aagaaaaaggatgccaaaactggaagcattgaagacgatccagaatataagaagtttttg
gaaacttattgtgtggaggaagagaaacctaatacgaatcccgaaacacttctgggagac
atagaggcaaagacaagagaacttattgctagaagaactacacctcttttggaatatatt
agaaatagaaaattagagaagcagaggattcgagaagagaagcgagaagagcgaaggagg
agggaactggagaagaagcgtttacgggaagaagaaaagaggaagaggagagaagaggag
aggtgtaagaggaaagaggcagacagagagaagagagctgctgagagagaagtaaggatt
aagcttcttaagaaaccagaaaagggggaggaaccaactgagaagccaaaggaaagagga
gaggaagtggatgttggagatgggaagcaggagatgagtcttagctatgctgtcctgaag
cccatgcccttggagagctcgctggagaagcccaggaaaaagtcacagaatgatagtgac
aaagagcaaagagagatggagagaagacttcgagcaaaggagcctgagacacaaagatgc
cacatggatggcagcatgcacagagcgcactctgagtttaacaggtttgcgaggagaaac
gaagaagagccgagatgggggaaaggagtccccccagaccgagggaagaaggggaaccag
gacagtagcatccctgtggaggcagcagagtggcctgggagagaacacaagagtgaaggt
ggcctagcacccagcatggagcgcccaggaaacaaggatttgccggccttgcagctgtac
caaccagaagctcacatccgagcacaagaaagtggtgggggaatctctgttgagggccgt
gatgggagcaggggtgaggctgaagatttggcactagctgaagagtga
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integrated database retrieval system
