KEGG   Kaistella faecalis: LL667_00215
Entry
LL667_00215       CDS       T08247                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
cfae  Kaistella faecalis
Pathway
cfae03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:cfae00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    LL667_00215 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cfae03400]
    LL667_00215 (ligD)
Enzymes [BR:cfae01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     LL667_00215 (ligD)
DNA repair and recombination proteins [BR:cfae03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     LL667_00215 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S mRNA_cap_enzyme
Other DBs
NCBI-ProteinID: UFK97794
LinkDB
Position
complement(39412..41952)
AA seq 846 aa
MPLEKYNEKRDFKQTAEPKGKSQSSKGKLKFVIQRHAASRLHYDFRLEMDGVLKSWAVPK
GPSLNPEDKRLAMMVEDHPFAYRSFEGSIPEGNYGAGEVEIWDEGTYEPLEKAKGKTDDL
LMQAELHKGSLKFILHGKKLKGEFALVKIKNSDSGEPWLLIKHKDKFATDHYDAEENTAE
DSAVTAYLNSKKKVKKVEKKSEEVKTYRNYTPSLSGEKKLTKFITPMLAGTTDKPFSSPD
WAFEIKWDGYRAVADLRKDIQLYSRNGLSYVEKFKKVSNSLKFQEHEMILDGELVAYDDQ
GKPNFQWLQRIGDNPNLNVIYQVFDLLWLNGHSTENLSLIQRKELLKDALVETEYIKYHD
HVLENGEKFFRLVEKMELEGMIAKKIDSTYHRGTRNGDWLKIKSQKTEEVLICGFTAPKG
SRKKFGSLVLGRYDGDELIFCGHTGTGFSDKGLVELYGKMEPLITDKPPFTTTPKTNDKP
TWLKPELIAEIKFTELTGDHIFRHPVFLRLREDLNPKDLNVRKDEEKYVADPVPLKKSVM
KRENEQLQKFGKQEVKLTNQNKIYFPKDQVTKGDVIAYYQSVAKYILPHLKDRPQSMNRF
PNGIDGMSFYQKDASDEIPDWIETQKVFSESTDKYINYILCNDKATMAYLNNLGCIELNV
WTSRKETTDKPDYLVLDLDPSDNNTFEDVILTAQTVKKVMDKAKIKGYCKTSGSSGIHIY
IPAGAQYSFEQVKNFAHIMMQMVQKELPDLTTLERTLQKRDKGKIYLDYLQNRRGQTLAS
VYSLRPKNGAPVSMPIEWDELKIGLKPTDFNIENALARIEEKGDLFKPVLGKGFDMLKAI
SLLETE
NT seq 2541 nt   +upstreamnt  +downstreamnt
atgccattagagaaatacaacgaaaaaagggattttaaacagacggcagaacccaaagga
aaatcccagagtagtaaaggaaaactgaaattcgtgattcagcgccatgccgccagcagg
ctgcattatgatttccggctggaaatggatggtgtactgaaaagctgggctgtcccgaaa
ggaccttccttaaatccggaggacaaacgccttgcgatgatggttgaagaccaccctttt
gcttaccgcagttttgaaggaagtatcccggaagggaattacggtgccggcgaagtggaa
atctgggacgaaggaacttacgaacctctggaaaaagctaaaggtaaaaccgatgatctg
cttatgcaggcagaattgcataaaggttctctgaaattcatccttcacggtaaaaagctt
aaaggcgaatttgccctcgtaaaaattaaaaattctgacagcggagagccctggcttctc
atcaaacacaaggataaatttgccacagaccattacgatgctgaagaaaataccgcagaa
gattccgccgttacagcatatctaaattcaaaaaaaaaagtaaaaaaagttgagaaaaag
tcggaggaggtaaaaacataccggaattatactccttcactcagcggcgagaaaaaactc
accaagttcattactcccatgcttgcgggaactactgataaacctttcagttccccggac
tgggcgttcgaaattaaatgggacggctaccgtgccgtggccgatctccggaaagatatt
cagctgtattccagaaatggactttcgtatgttgaaaagtttaagaaagtgagtaactcg
ctgaaatttcaggaacacgaaatgattctggacggcgaactggttgcgtatgatgatcag
ggaaagccgaatttccagtggctgcagcggattggcgataatcccaacctaaacgtgatt
tatcaggtttttgatctcttgtggctgaacggtcattccacagaaaatctaagtctcatc
caaaggaaagaacttctgaaagacgctttggtagaaaccgaatacatcaaataccatgat
catgtcctggaaaatggagaaaaatttttccggctggtagagaagatggaactggaaggc
atgatcgccaagaaaatagacagcacttaccaccgcggtacccgaaatggtgattggctg
aaaataaaaagccagaagaccgaagaagtccttatttgtggatttaccgctcctaaaggc
agtcgcaagaaatttggatcactagttctcggacgttatgatggggatgaactgattttt
tgcggacatacaggtaccggcttcagcgacaaaggtcttgtagaactctacggaaaaatg
gaaccgctgattaccgataagccacctttcacgacgacaccaaagaccaacgataaaccg
acctggcttaaacctgaacttattgctgaaattaaattcacggaacttacgggcgaccat
atcttcagacatcctgtttttctgaggctcagagaagatcttaatcccaaagatcttaat
gtcaggaaagatgaagaaaaatatgtcgctgatccagtaccattaaaaaaatcagttatg
aaaagagaaaatgagcagctgcagaaatttggaaagcaggaagtgaaactgaccaaccag
aataaaatttatttcccgaaagatcaggttaccaaaggcgacgtgattgcttattaccaa
agcgttgcaaaatatattctgccccacctgaaagacaggcctcagtcgatgaaccgattt
cctaatggaatagatgggatgagcttctatcagaaagacgcctccgacgaaatcccggac
tggattgaaacccagaaagtattttcggagtccaccgataaatacatcaattacatcctc
tgcaacgataaggcaacgatggcttatcttaataatttgggctgcatcgagcttaatgtc
tggacaagccggaaagaaaccaccgataaaccggattatctggtgctggatcttgatcct
tcggacaacaatacatttgaagacgtaattcttaccgcgcaaaccgtgaaaaaggtaatg
gataaagccaaaataaaaggatactgcaaaacatcgggcagttcaggaatccacatttat
atcccggcgggcgcacagtattcttttgaacaggttaaaaattttgcccatatcatgatg
cagatggtgcagaaagaacttccggatctcacaacactcgaacgcaccttacagaagcgg
gacaaaggaaaaatttatcttgattacctccagaaccgccgcggacaaacccttgccagc
gtatacagcctccgtccgaaaaacggcgcaccggtttccatgcccattgaatgggacgaa
ctgaaaatcggcctcaaacctactgatttcaacattgaaaacgcattggcaagaattgag
gaaaaaggcgatctcttcaaaccggtactgggcaaaggttttgatatgctgaaggcaatt
tcacttttagaaacggaataa

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