Citrobacter farmeri: CI104_21005
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Entry
CI104_21005 CDS
T05012
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
cfar
Citrobacter farmeri
Pathway
cfar03410
Base excision repair
cfar03430
Mismatch repair
cfar03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cfar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CI104_21005 (recJ)
03430 Mismatch repair
CI104_21005 (recJ)
03440 Homologous recombination
CI104_21005 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cfar03400
]
CI104_21005 (recJ)
DNA repair and recombination proteins [BR:
cfar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
CI104_21005 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
CI104_21005 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CI104_21005 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
DHH
RecJ_OB
PEP-utilizers
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
AST81391
LinkDB
All DBs
Position
complement(4233767..4235500)
Genome browser
AA seq
577 aa
AA seq
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MKQQIQLRRREVDESAELPADLSPLLRRLYASRGVRSAQDLERSVKGMLPWQQLSGVEKA
VEILYNAFREGTRIIVVGDFDADGATSTALSVLGMRSLGCDNISYLVPNRFEDGYGLSPE
VVDQAHARGAQLIVTVDNGISSHAGVDHARALGIPVVVTDHHLPGETLPAAEAIINPNLT
DCDFPSKSLAGVGVAFYLMLALRTFLRDKGWFDERGIAPPNLADLLDLVALGTVADVVPL
DANNRILTWQGLSRIRAGKCRPGIKALLEVSNRDAQKLAASDLGFALGPRLNAAGRLDDM
SVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQAEALTLCEKLERSRETLPGGLAM
YHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLHP
GLMIKFGGHAMAAGLSLEEAKFDLFQQRFGELVTEWLDPSLLQGEVVSDGPLSAAEMTME
VAQLLRDAGPWGQMFPEPLFDGRFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTA
CWPDNGVREVELAYKLDINEFRGNRSLQIIIDNIWPV
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
gtgaaacaacagatacaacttcgtcggcgggaagtcgatgagtcggcagagctgcctgcc
gacctttcgccgctgttgcgccgcttatatgccagtcgtggtgttcgcagcgcccaggat
ctcgagcgcagcgtaaaaggcatgctgccctggcagcaactgagcggcgtcgaaaaagcg
gtcgaaatcctctataacgcctttcgcgaggggacgcgcatcatcgtcgtcggcgacttc
gatgcggatggggcaaccagcaccgccctgagcgtactggggatgcgctcgctgggctgc
gataacatcagctacctggtgccaaaccgttttgaggatggttacggcttaagcccggaa
gtagtcgatcaggcccatgcgcgcggtgcacaactgattgtcaccgtcgataacggtatt
tcttcccatgccggtgtggatcatgccagggcactggggatcccggtggtggttaccgat
caccacctgcctggcgaaacgctgccggctgccgaagccattatcaacccgaatctgacc
gattgtgatttcccgtcgaaatcgctggccggcgtgggcgtggcgttttacctgatgctc
gccctacgcacttttctgcgcgataagggctggtttgacgaacgtggcattgcgccgccg
aacctggcggatctgctcgatctggttgcgctgggcaccgtggcggacgtggtgccgctg
gatgccaacaaccggatcctcacctggcagggcttaagccgcatccgtgccggaaaatgc
cgtccagggatcaaagcgttgctggaagtctccaatcgtgatgcgcaaaagctcgctgcc
agtgatttaggcttcgcgctcggtccgcgtctgaacgctgcgggccggttagatgatatg
tccgtcggtgtggcactattgctgtgcgataacatcggcgaagcgcgggtactggccaat
gagttggatgcgctgaatcagacgcgtaaagagattgagcaagggatgcaggcggaagcg
ctgaccttgtgcgagaagctggagcgcagtcgcgagacgctgccaggcggtctggcgatg
tatcatcctgagtggcaccagggagtggtcgggatcctcgcctcgcggattaaagagcgt
tttcaccgcccggtgatcgcttttgcaccggcaggtgacggcacgctgaaaggctccgga
cgctccattcagggactgcacatgcgagatgcgctggagcgactggatacgctgcatcca
ggactgatgattaaattcggtggtcatgcaatggcggcgggactgtcgctggaagaggcg
aaattcgacctgttccagcagcgttttggcgagctggtcaccgaatggctggatccgtcg
ttgttacaaggggaagtcgtctctgacggtccgctgagcgcggcggagatgacgatggag
gtcgcgcaactgctgcgtgacgccggtccatggggacagatgttccctgaaccgttgttt
gacgggcgtttccgtctgcttcagcagcgtctggtcggcgagcggcatttgaaagtgatg
gtcgaacccgttggcggaggaccgctgctggacggtattgcctttaacgtcgataccgcc
tgctggccggataacggcgtgcgcgaagttgaactggcctacaaactggatattaacgaa
tttcgcggtaaccgcagtttgcagatcatcatcgataatatctggcctgtgtaa
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