Clostridium felsineum DSM 794: CLFE_010220
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Entry
CLFE_010220 CDS
T08216
Symbol
rho
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
cfb
Clostridium felsineum DSM 794
Pathway
cfb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLFE_010220 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cfb03021
]
CLFE_010220 (rho)
03019 Messenger RNA biogenesis [BR:
cfb03019
]
CLFE_010220 (rho)
Transcription machinery [BR:
cfb03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CLFE_010220 (rho)
Messenger RNA biogenesis [BR:
cfb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CLFE_010220 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA_22
SAP
Spore_III_AA
AAA
ATPase_2
Ribosomal_L12_N
AAA_14
AAA_16
Motif
Other DBs
NCBI-ProteinID:
URZ15009
LinkDB
All DBs
Position
1065423..1066994
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AA seq
523 aa
AA seq
DB search
MINNDLNDLESMTVTELKELAKELGLKNVSKYRKKDLIDEINKKSPNSIEKDGVMLKENI
KPKNVLEEKSNTVMESGNNSNTNNSNTNNSNTNNINANNGNINNSNANTNTNTNNNNTMN
NNARTGERVHNNNRYVPKENKNERFKEMVDESDSAKGVLELVENNNFGFLRGKNYLTSPE
DIYVSPSQIRRFNLKTGDEVQGKVRIPKEGEKFKALLYVEKVNGENPEKSVRRAPFEKLT
PIYPNERLSLEKNSEELATRLMDLISPIGKGQRGLIVAPPKAGKTTLLKSVAQSLAQNHP
ETKLIVVLIDERPEEVTDMQRSIKGEVIYSTFDEEPEHHTKVAYMVLERAKRMVEQGQDV
VILLDSLTRLARAYNLTITPTGRTLSGGLDPGALIMPKKFFGAARNIEEGGSLTILATAL
VDTGSRMDDMIFEEFKGTGNMEVHLDRRLQERRIFPAIDIYKSGTRKESELLNHDELEAA
FKIRRVLYGSNNSTQDVTEKLINMLNETKNNIDIVNIINKGKW
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
ttgattaataatgacttaaatgacctagagagtatgacagttacagagttaaaagaatta
gcaaaagaacttggacttaaaaatgtatctaaatatagaaaaaaagatttaatagatgaa
ataaataaaaagtctccaaatagcatagaaaaagatggtgttatgcttaaggaaaatata
aagcctaaaaatgttttggaggaaaaaagcaatactgtaatggagagcggcaataatagc
aatacaaataatagcaatacaaataatagtaacacaaataatatcaatgcaaataatggc
aatataaacaatagtaatgcaaatacaaatacaaatacaaataacaataatactatgaac
aataatgctagaactggtgaaagagtacacaataataatagatatgtaccaaaagaaaac
aaaaatgaaagatttaaagaaatggtagatgaatcagattcggcaaaaggagtacttgaa
ttagtagaaaataataattttggatttttaagaggtaaaaactacctaactagtccagag
gacatatatgtatcaccttcacaaataagaagatttaatttgaaaacgggtgatgaagtt
caaggaaaagttagaatacctaaagagggagaaaaatttaaagcacttttatatgttgaa
aaggttaatggtgagaatccggaaaaatcagttagaagagcgccgtttgaaaaattaact
cctatatatcctaatgaaagattaagcttagaaaaaaatagtgaggaacttgcaacaagg
cttatggatttaataagccctataggaaaaggacagagaggacttatagtagcacctccg
aaggctggaaaaacaactcttcttaaaagtgtagctcaaagtttagctcaaaatcatcct
gagactaagcttatagtagttttaattgatgaaagaccggaagaagttacagatatgcaa
agaagcataaagggagaggtaatatattctacttttgatgaagagccagagcatcatact
aaagttgcatatatggttcttgaaagagcaaagagaatggttgaacaaggtcaggatgta
gtaatacttttagatagtttaacaaggcttgcaagagcttataaccttacaataacacca
actggtagaactctttccggaggacttgatccaggagctttaattatgcctaaaaagttc
tttggagcagctagaaatatagaagagggcggaagtcttacaatactagctacagcatta
gttgataccggaagtagaatggatgatatgatttttgaagagtttaagggaaccggaaat
atggaagttcatcttgatagaagacttcaagagagaagaatcttcccagctattgatata
tataaatctggaactagaaaagaaagtgaacttttaaatcatgatgaacttgaggcggca
tttaaaataagaagagttctctatggtagtaataatagtacacaagacgttactgaaaag
cttattaatatgcttaatgagactaagaataatattgatattgtaaatattataaataaa
ggaaagtggtag
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