KEGG   Caproicibacter fermentans: HCR03_13605
Entry
HCR03_13605       CDS       T07651                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
cfem  Caproicibacter fermentans
Pathway
cfem03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:cfem00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    HCR03_13605 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cfem03400]
    HCR03_13605 (ligD)
Enzymes [BR:cfem01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     HCR03_13605 (ligD)
DNA repair and recombination proteins [BR:cfem03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     HCR03_13605 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S mRNA_cap_enzyme RNA_ligase
Other DBs
NCBI-ProteinID: QNK39751
UniProt: A0A7G8T810
LinkDB
Position
complement(2754394..2756850)
AA seq 818 aa
MSATKLEEYNRKRNFEKTWEPEGKPVPAGKRLKFVVQHHLARKDHYDFRLEWDGALLSWA
VPKGPSRNVRDKRLAIRVEDHPLEYRNFEGTIPKGQYGGGTVMLWDEGFWEPLSEVAEGL
RAGSLKFVLKGKRLQGKWALVRLKAKAGKEEDNWLLIKEKDGYAKDTDGISGFVTSVRTG
RSMEEIEAGKEEKITRNPFQSADAQLAKLVAAVPEGEDWLYEIKYDGYRILAYAEGGAVR
LVTRNGNDYTERFQEVADSIAAWSGGRAMVLDGEMTVADSRGRTDFQALQSYLKNPGDKQ
LTYLVFDVLALDGEDLRELPLTDRKNTLEALLNDAPKNLRYSRHVEGNGKESLLAACKLN
LEGIVGKKPGSVYSGTRNGDWIKLKCEKRQEFVIGGYTRSEKRLGGISSLLLGVYEGKDL
VYAGRAGTGLSEKSMRELEEKFEPIKRESPPFRQAPKTKKNETVTWLQPETVAEIRFAEW
TEEHLLRQASFKGLRSDKNPEEVRMEEPNSEKDKSAEGPKTPAPSGAAKSSSDGGAAVMG
VRISNPEKVLFEDSGITKADVARYYAAVSERMLPYAANRILSIVRCPKGISAACFFKKHP
GPGSKGVVTIPVQTGSGETEDYFYLENAAGLISEAQMGTLEFHIWGSRVENIEKPDLMVF
DLDPDEGMELAGVRRGVRDIKSVLDQLSLTSFLKTSGGKGYHVVVPFQPSVGWDAFHDFA
KRTAELMEQKWPDRYTSNIRKEKRKGRIFIDWIRNGRGATSIAPYSIRARAGASVSMPIT
WKELDTVAPSGIHMADALKRIQEKDPWDGFFRLNQRLK
NT seq 2457 nt   +upstreamnt  +downstreamnt
atgagcgcaacgaaactggaagaatacaaccgaaaaagaaactttgagaaaacgtgggaa
cccgaaggaaaaccggtcccggccggaaagcgcctgaaattcgtcgttcagcatcacctt
gcccgaaaggaccactacgacttccgcctggaatgggacggagctctcttaagctgggcg
gttcccaaggggccgtctaggaacgttcgcgacaagaggctcgccatacgggtggaggac
cacccgctggaataccggaactttgaaggaaccatccccaaaggccagtacggcggcgga
accgtgatgctctgggacgaaggcttctgggaaccgctgtcggaggtcgcggagggcctt
cgcgccggttccctgaaatttgttctgaaaggaaaacgccttcaggggaaatgggctctg
gtccgcttgaaagcgaaagccggcaaagaggaagacaactggctcctgatcaaagaaaaa
gacgggtacgcgaaagataccgacggtatttccggtttcgtcacaagcgtccgaacaggg
cgctccatggaggaaatcgaagcgggaaaagaagaaaagatcacgcggaacccctttcaa
agcgccgacgcgcagcttgcaaagctcgttgcggcagttcccgagggtgaggactggctg
tacgaaatcaaatacgacggatacagaattctggcgtacgcggagggcggcgccgtccgt
ctcgtcaccaggaacggcaacgactacacagagcggtttcaggaggttgcggattccatc
gccgcctggtcaggcggcagggcaatggtactggacggagaaatgacggtcgcggattcg
cgtggcaggacggattttcaggcactgcaaagctacctgaaaaacccgggagacaagcag
ctcacctatctcgtctttgatgttctggcgctggacggcgaggatttgagagagctcccc
ctgaccgaccgcaagaatacgctggaagcccttttgaacgacgcgccgaaaaacctccgc
tacagccggcatgtcgaaggcaacggaaaagaaagcctgcttgcggcctgcaagttaaat
ctggagggaatcgtgggaaaaaaacccggttccgtctacagcgggacaagaaacggcgac
tggatcaagctcaaatgtgaaaagcggcaggaattcgtcatcgggggatatacgcggtct
gaaaaaaggctcggcgggatcagctcgcttcttctcggcgtctacgaaggaaaagatctg
gtttacgcgggacgcgccggaacgggtttgagcgaaaaaagcatgagagagctagaagaa
aaattcgagccgatcaaacgggaatcgccgccgttccggcaggcgccgaagacgaagaaa
aatgaaaccgtcacctggttgcagccggaaacggtcgcggagattcgatttgccgagtgg
acggaagaacatctgttaaggcaggcaagtttcaagggcctgcggtcggacaaaaacccc
gaggaggtcagaatggaagagccgaattccgaaaaagacaagagcgcggaggggccgaag
acaccggcgccctccggcgcggcaaaatcatcatccgacggcggcgccgcggttatgggc
gtcaggatcagtaatccggaaaaggttctgttcgaggattccggaatcaccaaagcggac
gtcgcccggtattacgcggcggtgtcggagcgcatgctgccctacgctgcaaacaggatc
ctcagcatcgtgcgctgccccaagggaatttccgcggcctgcttttttaaaaaacacccc
ggcccgggcagcaagggagtcgtaaccattccggttcaaaccggaagcggagagacggag
gattatttttatcttgaaaacgccgccggcctgatttcagaggcgcagatgggcacgctg
gaatttcacatttggggaagccgggtcgaaaacattgaaaagcccgacctgatggtattc
gatctggacccggacgagggaatggagctggcaggggtgcggcggggcgtacgggacatc
aaaagcgtgctggaccagctttcgctgacctcgtttctcaaaaccagcgggggcaagggt
taccacgtcgtcgtccctttccagccctccgtcggctgggatgcctttcatgattttgca
aaacgcaccgcggagctgatggaacaaaaatggccggatcgttacacgagcaatatcaga
aaagaaaagcggaaaggccggattttcatcgactggattcgaaacggcagaggcgccacc
agcatcgccccctactccatccgggcgagagcgggggcttccgtctccatgccgattacc
tggaaagagctcgacacggtcgcccccagcggaatccatatggcggacgccctgaaacgc
attcaggaaaaagacccctgggatggctttttccggctcaatcagcgcctgaaataa

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