Caproicibacter fermentans: HCR03_13605
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Entry
HCR03_13605 CDS
T07651
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cfem
Caproicibacter fermentans
Pathway
cfem03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cfem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HCR03_13605 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cfem03400
]
HCR03_13605 (ligD)
Enzymes [BR:
cfem01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HCR03_13605 (ligD)
DNA repair and recombination proteins [BR:
cfem03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HCR03_13605 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QNK39751
UniProt:
A0A7G8T810
LinkDB
All DBs
Position
complement(2754394..2756850)
Genome browser
AA seq
818 aa
AA seq
DB search
MSATKLEEYNRKRNFEKTWEPEGKPVPAGKRLKFVVQHHLARKDHYDFRLEWDGALLSWA
VPKGPSRNVRDKRLAIRVEDHPLEYRNFEGTIPKGQYGGGTVMLWDEGFWEPLSEVAEGL
RAGSLKFVLKGKRLQGKWALVRLKAKAGKEEDNWLLIKEKDGYAKDTDGISGFVTSVRTG
RSMEEIEAGKEEKITRNPFQSADAQLAKLVAAVPEGEDWLYEIKYDGYRILAYAEGGAVR
LVTRNGNDYTERFQEVADSIAAWSGGRAMVLDGEMTVADSRGRTDFQALQSYLKNPGDKQ
LTYLVFDVLALDGEDLRELPLTDRKNTLEALLNDAPKNLRYSRHVEGNGKESLLAACKLN
LEGIVGKKPGSVYSGTRNGDWIKLKCEKRQEFVIGGYTRSEKRLGGISSLLLGVYEGKDL
VYAGRAGTGLSEKSMRELEEKFEPIKRESPPFRQAPKTKKNETVTWLQPETVAEIRFAEW
TEEHLLRQASFKGLRSDKNPEEVRMEEPNSEKDKSAEGPKTPAPSGAAKSSSDGGAAVMG
VRISNPEKVLFEDSGITKADVARYYAAVSERMLPYAANRILSIVRCPKGISAACFFKKHP
GPGSKGVVTIPVQTGSGETEDYFYLENAAGLISEAQMGTLEFHIWGSRVENIEKPDLMVF
DLDPDEGMELAGVRRGVRDIKSVLDQLSLTSFLKTSGGKGYHVVVPFQPSVGWDAFHDFA
KRTAELMEQKWPDRYTSNIRKEKRKGRIFIDWIRNGRGATSIAPYSIRARAGASVSMPIT
WKELDTVAPSGIHMADALKRIQEKDPWDGFFRLNQRLK
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcaacgaaactggaagaatacaaccgaaaaagaaactttgagaaaacgtgggaa
cccgaaggaaaaccggtcccggccggaaagcgcctgaaattcgtcgttcagcatcacctt
gcccgaaaggaccactacgacttccgcctggaatgggacggagctctcttaagctgggcg
gttcccaaggggccgtctaggaacgttcgcgacaagaggctcgccatacgggtggaggac
cacccgctggaataccggaactttgaaggaaccatccccaaaggccagtacggcggcgga
accgtgatgctctgggacgaaggcttctgggaaccgctgtcggaggtcgcggagggcctt
cgcgccggttccctgaaatttgttctgaaaggaaaacgccttcaggggaaatgggctctg
gtccgcttgaaagcgaaagccggcaaagaggaagacaactggctcctgatcaaagaaaaa
gacgggtacgcgaaagataccgacggtatttccggtttcgtcacaagcgtccgaacaggg
cgctccatggaggaaatcgaagcgggaaaagaagaaaagatcacgcggaacccctttcaa
agcgccgacgcgcagcttgcaaagctcgttgcggcagttcccgagggtgaggactggctg
tacgaaatcaaatacgacggatacagaattctggcgtacgcggagggcggcgccgtccgt
ctcgtcaccaggaacggcaacgactacacagagcggtttcaggaggttgcggattccatc
gccgcctggtcaggcggcagggcaatggtactggacggagaaatgacggtcgcggattcg
cgtggcaggacggattttcaggcactgcaaagctacctgaaaaacccgggagacaagcag
ctcacctatctcgtctttgatgttctggcgctggacggcgaggatttgagagagctcccc
ctgaccgaccgcaagaatacgctggaagcccttttgaacgacgcgccgaaaaacctccgc
tacagccggcatgtcgaaggcaacggaaaagaaagcctgcttgcggcctgcaagttaaat
ctggagggaatcgtgggaaaaaaacccggttccgtctacagcgggacaagaaacggcgac
tggatcaagctcaaatgtgaaaagcggcaggaattcgtcatcgggggatatacgcggtct
gaaaaaaggctcggcgggatcagctcgcttcttctcggcgtctacgaaggaaaagatctg
gtttacgcgggacgcgccggaacgggtttgagcgaaaaaagcatgagagagctagaagaa
aaattcgagccgatcaaacgggaatcgccgccgttccggcaggcgccgaagacgaagaaa
aatgaaaccgtcacctggttgcagccggaaacggtcgcggagattcgatttgccgagtgg
acggaagaacatctgttaaggcaggcaagtttcaagggcctgcggtcggacaaaaacccc
gaggaggtcagaatggaagagccgaattccgaaaaagacaagagcgcggaggggccgaag
acaccggcgccctccggcgcggcaaaatcatcatccgacggcggcgccgcggttatgggc
gtcaggatcagtaatccggaaaaggttctgttcgaggattccggaatcaccaaagcggac
gtcgcccggtattacgcggcggtgtcggagcgcatgctgccctacgctgcaaacaggatc
ctcagcatcgtgcgctgccccaagggaatttccgcggcctgcttttttaaaaaacacccc
ggcccgggcagcaagggagtcgtaaccattccggttcaaaccggaagcggagagacggag
gattatttttatcttgaaaacgccgccggcctgatttcagaggcgcagatgggcacgctg
gaatttcacatttggggaagccgggtcgaaaacattgaaaagcccgacctgatggtattc
gatctggacccggacgagggaatggagctggcaggggtgcggcggggcgtacgggacatc
aaaagcgtgctggaccagctttcgctgacctcgtttctcaaaaccagcgggggcaagggt
taccacgtcgtcgtccctttccagccctccgtcggctgggatgcctttcatgattttgca
aaacgcaccgcggagctgatggaacaaaaatggccggatcgttacacgagcaatatcaga
aaagaaaagcggaaaggccggattttcatcgactggattcgaaacggcagaggcgccacc
agcatcgccccctactccatccgggcgagagcgggggcttccgtctccatgccgattacc
tggaaagagctcgacacggtcgcccccagcggaatccatatggcggacgccctgaaacgc
attcaggaaaaagacccctgggatggctttttccggctcaatcagcgcctgaaataa
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