Cellulomonas fengjieae: KG102_09770
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Entry
KG102_09770 CDS
T08576
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cfen
Cellulomonas fengjieae
Pathway
cfen03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cfen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KG102_09770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cfen03400
]
KG102_09770
Enzymes [BR:
cfen01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KG102_09770
DNA repair and recombination proteins [BR:
cfen03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KG102_09770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QVI67885
LinkDB
All DBs
Position
2097436..2099001
Genome browser
AA seq
521 aa
AA seq
DB search
MRDFSRTPEPAGARAGTAPATARRFVVQRHRARRLHYDLRFEIDGVLVSWAVPRGPTLDP
AVRRMAVHVEDHPLEYADFEGVIPAGEYGGGDVIVWDRGTWEPTKTQDPAAEVAGGELHA
VLHGSKLRGHVVLVRRDGADDGSKEQWLLLHKRDEHAVPGWDAEDHPRSVLSGRTNDEVQ
ADPDRLWRSDLPAAEASIDLHPEPVAPPTADELAALDDLGPAGTWDVFGRRLRLTNLDKV
LFPARDREEPVTKRELVRYAALVAPVALPYLRGRALNMHRFPQGAAHKGFWHKQLPEHAP
AWVGRWVNPEADPGETTTYLVVDEPAALVWAANFGALEWHAWTSRTADPHLPTYALIDID
PGTSTSWQDVLLLARLHRDAFEHLGVRAQPKLTGRRGIQIWVPIATGPTFDDTRAWVQTL
SRTVGKVVPDLVSWRWEVRERGGQARLDYTQNAINKTLVAPYSPRAAAGAPVSAPIAWDE
LDEPWLRPDAFTLRTVPDRIAQRGDLFATVLTADQALPRIR
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgacttcagccgcacgccggagccggccggtgcccgtgcgggtaccgctccggcg
accgcgcgccggttcgtcgtgcagcgccatcgcgcgcgccgcctgcactacgacctgcgg
ttcgagatcgacggcgtcctggtcagctgggcggtccctcgcggcccgacgctcgacccc
gcggtgcggcgcatggctgtccacgtcgaggaccacccgctggagtacgccgacttcgaa
ggcgtgatcccggcgggcgagtacggcggcggtgacgtcatcgtctgggaccgcggcacg
tgggagcccacgaagacccaggaccccgccgccgaggtggccggcggcgagctgcacgcc
gtgctgcacggctccaagctccgcgggcacgtcgtcctggtgcggcgggacggggccgac
gacggcagcaaggagcagtggctcctgctgcacaagcgcgacgagcacgccgtcccgggg
tgggacgcggaggatcatccgcggtccgtcctgagcgggcgcacgaacgacgaggtccag
gcggaccccgaccggctgtggcgctccgacctgcccgcggcggaggcttccatcgacctg
caccccgagcccgtcgcgccgcccacggccgacgagctcgccgccctggacgacctcggc
ccggccggcacctgggacgtcttcggccggcgcctccggctgacgaacctcgacaaggtg
ctgttccccgcacgcgaccgagaggagcccgtgaccaagcgggagctcgtccgctacgcc
gcgctcgtcgcgcccgtcgcgctcccctacctgcgcggccgcgccctcaacatgcaccgc
ttcccgcagggcgcggcccacaaggggttctggcacaagcagctgcccgagcacgcaccg
gcgtgggtggggcgctgggtgaaccccgaggccgaccccggggagacgaccacctacctg
gtggtcgacgaaccggccgcactggtgtgggcggccaacttcggcgccctcgagtggcac
gcgtggacctcccggacggccgacccgcacctgcccacgtacgccctgatcgacatcgac
ccgggcacctcgacgtcctggcaggacgtgctcctgctcgcccggctgcaccgcgacgcg
ttcgagcacctcggcgtccgcgcccagcccaagctgaccgggcggcgaggcatccagatc
tgggtccccatcgccaccggccccaccttcgacgacacccgagcctgggtgcagaccctg
tcgcgcaccgtcggcaaggtcgtccccgacctggtcagctggcggtgggaggtgcgcgag
cgcggtggacaggcgcgcctggactacacccagaacgcgatcaacaagacgctcgtcgcc
ccgtacagcccgcgggcggcggccggtgcgccggtctccgcacccatcgcctgggacgag
ctcgacgagccgtggctccggcccgacgcgttcaccctgcgcacggtcccggaccggatc
gcacagcgaggggacctgttcgcgaccgtgctcacggccgaccaggctctcccgaggatc
cggtag
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