Corynebacterium felinum: CFELI_04285
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Entry
CFELI_04285 CDS
T09308
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cfeu
Corynebacterium felinum
Pathway
cfeu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cfeu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CFELI_04285 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cfeu03400
]
CFELI_04285 (mfd)
Enzymes [BR:
cfeu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CFELI_04285 (mfd)
DNA repair and recombination proteins [BR:
cfeu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CFELI_04285 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
WJY94489
LinkDB
All DBs
Position
919381..923172
Genome browser
AA seq
1263 aa
AA seq
DB search
MLRGLLKVAATDPKLKGLISHVGQKSLHITGIDQARPWAIGALAHHAPVLVVTATGREAE
DLCAELKAMYGDKVAWFPAWETLPHERLSPAADVIGARAKVLNQLDELKIVVTAARGLCQ
PVPRTVAGREVLRLDLGAEKEFNDVVEALVFRAYKHVDLVAKKGEFAVRGGILDIFPTTS
EQPVRVEFWGDEITEIRSFSVADQRAFSEGELDSIDIFPARELPITDDIAQRATHLAHEV
AGHPVLQELLTKIANKQPADGMEALIPALVDTDFVTLAELMPEGTHVIAIGPEKIRRRIA
DLQATDAEFLAASWEAAAMGADGPVASKHVDLSASNYRSYESLEIAALNAGQSWWTFAPP
GMFEADESDTLPLEFDPAPAPRGDVEKINDMMAMLLAHTLDGGRAAFIAPAHGAIKRMVE
RFGDKGIRTKVATPGWEPSPGEVTLYQALSHAGLVFPKVRKHKDGAALPLIVITETDLTG
NRVGDIAQAKRRKAKKRHRVDPLALKTGDYVVHETHGIGRFLKMTERTITTGDETSRREY
IVLEYASSKRGQPADQLYVPMDSLDLLSKYVGGEKPTLSKMGGSDWKNTKKKARAAVREI
AGELVQLYAKRQAAPGHAFAPDSPWQREMEDNFPYVETEDQMLAIESVKEDMEKPVPMDR
VVVGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHFSTFSERMSGFPVTIRNLS
RFTSAMEAKETLAGLVDGSVDVVIGTHRLLQTGVQWKNLGLVVVDEEQRFGVEHKEHIKA
MRSHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPQDRHPILTYVGAQEEKQIAAAIRR
ELLRDGQVFYVHNKVKDIEKKARELRELVPEARIVVAHGQMNEELLEKTVQGFWDREFDV
LVCTTIVETGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGATLTE
NSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNILGAEQSGHIAGVGFDLYVRLVGEAVE
AYRALADGKVVDATEQGPKEIRIDLPVDAHIPESYISAERLRLELYRKLATSQSENDLKS
IREEMMDRFGPLPDEVLRLLSVARLRHVARQAGVGDIAVQGTRIKVHPVELSDSKQVRLK
RLYPGSTYRAAAQAIQISMPRAGRAVTDPKLRDVDLIQWCADFLADMWDLEKVDVRTGAY
DRKSSVISVEEKPAVQSRTQTRPNSAALVKEGHARPATKRRRLSDMDEDERREERRRRFR
LRD
NT seq
3792 nt
NT seq
+upstream
nt +downstream
nt
atgctgcgtgggctgctcaaagttgcagctactgaccctaaacttaaaggccttataagc
catgtggggcagaagtctcttcatattacaggtattgatcaagcgcgcccatgggcgatc
ggggctttagctcatcatgctcctgttcttgttgttacagctacagggcgtgaggctgaa
gatctgtgcgctgagcttaaagccatgtatggcgataaggtggcgtggtttcctgcatgg
gagaccttgccacatgagcgtttaagtcctgctgcggatgttattggtgcccgcgctaaa
gttttaaatcagctcgatgagcttaagattgtggtcacggctgctcgtggtttgtgccag
cctgttccacgcactgttgctggccgtgaagttttacgtttggacttaggggctgaaaaa
gaattcaacgatgtggttgaggctttagtttttcgagcctataagcacgttgatttggtg
gcgaagaaaggtgagtttgctgtccgtggcggtattcttgatatttttcccaccacgagc
gagcagcctgtgcgagtggaattctggggtgatgagatcaccgaaatccgcagtttctcg
gttgctgaccagcgggctttttctgagggggaattagacagcattgatattttccccgcg
cgggaattaccgatcactgatgacattgcgcaacgtgcgactcatcttgcacatgaagta
gcagggcacccagttctgcaggagttgttaacaaaaattgcgaataaacagcctgccgat
ggaatggaagcgttaattcctgcgctagttgataccgattttgtcaccctagctgaactc
atgcctgaaggcactcatgtgattgccattggcccggagaagattcgcaggaggatcgcg
gatttacaagcaacggatgctgagtttcttgcggcaagctgggaagctgcagcgatgggg
gctgacggaccagttgccagcaaacatgtggatctttcggcatccaattatcgctcgtat
gaatcgttggaaattgcggcgctcaatgccggccagtcttggtggacttttgccccaccg
ggaatgtttgaagctgatgaatctgacacgcttccattagagtttgatccagctcccgcg
ccacgtggtgatgttgagaagatcaatgacatgatggcgatgctgttagcccacacttta
gatggcgggcgagctgcatttattgcaccagcgcacggtgcaattaaacgtatggtggag
cgcttcggggacaaggggattcgcacgaaagtggccactcctggttgggaaccttctccg
ggcgaagtcacgttgtatcaagcattatcccatgccggccttgtgtttccaaaggtgcgc
aaacacaaagatggtgcggcgcttcctctgatcgttattaccgaaactgatctcacgggt
aaccgagtaggcgatatcgcacaggcgaagcgtcgaaaagcaaaaaagcgtcaccgtgtt
gatccgcttgcgttgaaaactggcgactatgtggtgcatgaaactcacggcatcggccgg
tttttaaagatgacagaacgcaccatcaccacaggggatgaaacttctcgccgtgagtac
atcgttttggaatatgcgtcgtctaaacgcgggcagcctgcggaccagttgtacgtgccc
atggattcgcttgatcttttgagcaaatacgttggtggcgaaaaacctaccttatccaaa
atgggcggttcggattggaagaatactaagaagaaagcccgcgcagctgtgcgcgaaatc
gccggtgagcttgttcagctctatgcgaaacgccaggccgcgccggggcatgcttttgcg
cctgattccccgtggcagcgcgagatggaagacaatttcccttatgtggaaactgaagac
cagatgctcgcaatcgagtctgtgaaagaggacatggaaaagccggttccaatggaccgt
gtggttgttggtgatgttggttacggcaaaactgaggtagcggtgcgtgctgcgtttaag
gcggtccaggatggcaaacaggttgcggtgttggtgccgacaacattgttggcgcagcaa
catttttctacgtttagcgagcgtatgtcgggtttcccggtcactattcgcaatctttca
cgctttacctccgcgatggaggcgaaggaaacactcgcggggcttgtcgacggcagtgtt
gatgtggtgattggcactcaccgtttgctgcaaacgggtgtgcagtggaaaaacttaggc
ttggttgttgtcgatgaagagcagcgctttggtgtggagcataaagagcacattaaagcg
atgcgcagtcacgtggatgtgttgacgatgtcggctacaccgattcctcgtacgttagag
atgagcatggcggggattcgcgaaatgtcgacgattcttacgcctccgcaggatcgtcat
cctattttgacgtatgtgggcgcgcaggaagaaaagcagattgccgctgctattcgtcgt
gaacttttgcgcgatggtcaggttttctatgttcacaataaggtgaaagatattgagaag
aaggcgcgggagcttcgtgagctcgtgcctgaggcgcggattgtggttgctcatggacag
atgaatgaggaacttcttgaaaaaaccgtgcaggggttctgggatcgggaatttgatgtg
ttggtctgtaccaccattgttgaaaccggtcttgatattgccaacgcgaatacgttgatt
gtggagaatgctcaccatatgggtttgtcgcagctccatcagctgcgcgggcgtgtgggg
cgttctcgtgaacgtggttatgcgtacttcttgtaccccaagggtgcgacgctgacggaa
aattcctacgatcgtttggctacaatcgcccaaaataatgatttaggtgcgggcatggcc
gtggcgatgaaggatctggaaatgcgtggcgctggcaatattttgggtgctgagcagtca
ggtcatatcgcgggcgtgggcttcgatttgtacgtgcgacttgtcggcgaggctgttgaa
gcgtatcgagctttggcagatgggaaggtcgttgacgcaactgaacaggggccgaaggag
attcggattgatttgcctgtcgacgcccacattccagagtcttatatcagtgctgagcgt
ttgcgtttggagctgtaccgaaagctggccacaagtcagtctgagaatgatttgaagagt
attcgggaagagatgatggaccgtttcggtccgcttcctgatgaagttttgagactgttg
tcggtagcacgattgcgtcacgtggcacgtcaggcgggagttggtgatattgcggttcag
ggtactcgtattaaggtgcatcctgtcgagctgagcgattcgaagcaggttcgtttgaag
cgcttgtatccaggttcaacctatcgcgctgccgcgcaggccattcaaatttcgatgcct
cgtgcaggccgtgcggttaccgatcctaagcttcgagatgttgatttgatccaatggtgt
gcagatttccttgcagatatgtgggatttggagaaagttgatgtgcgcacgggggcttat
gatcggaagtcttctgtaatttcagtagaggaaaagcctgcggtgcagtcgcgcactcag
actcgtccgaactcagctgcccttgtgaaggaggggcatgcccgtccggcaacgaagcga
cgtcgtctgtcagatatggatgaggatgaacgtcgtgaggagcgtcgtcggcggtttagg
ctgcgtgactaa
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integrated database retrieval system
