Campylobacter fetus subsp. fetus 82-40: CFF8240_0737
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Entry
CFF8240_0737 CDS
T00430
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cff
Campylobacter fetus subsp. fetus 82-40
Pathway
cff03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cff00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CFF8240_0737 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cff03400
]
CFF8240_0737 (mfd)
Enzymes [BR:
cff01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CFF8240_0737 (mfd)
DNA repair and recombination proteins [BR:
cff03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CFF8240_0737 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
UvrB_inter
SNF2-rel_dom
ATPase_2
Motif
Other DBs
NCBI-ProteinID:
ABK81987
UniProt:
A0RNX9
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All DBs
Position
743444..746401
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AA seq
985 aa
AA seq
DB search
MQARIYEFFKFNKNIYDILVTNDDKEAREAYDSASYAGLTCFVLPDFRAIQGDDLRAFNA
ELLEISKVLTEFYKSDSKNKLLISPIRTLLNKLPTSSNLKTKTISYADTLNLTEFKEEML
GFGYNFVDIVEGRGEIRISGEIIDIFSVSEDKPIRILLDIDTVCSIRYFDLDTQKSDKNE
LTSVIITPFLASLNSDELKDVNDKLENIDSNALIKDINSFGFWVIDGFSDYFESFKTVLA
MQIDIDDIVSNRDLSFLKAAPILPEPKIYKDLEVSVNSDLIKFHGSKKIQILSSNESSFN
ALNLENSSNVELVISNLILNIASKDELILSLNKRVKKQRVKKASLVIDELKTGDFVVHSD
YGIGKFLGLELITVLGSKKEFVVIAYQNNDKLLLPVEHLNMIDRYIAGSGAVVSVDRLGK
ASFAKIKEKVREKLFVIANKIIALAAKRELIEGIRLNADSQYAKFKSSAGFIYTDDQEKA
VNDIQNHLKSGRVMDMLLSGDVGFGKTEVAMNAIFLCVKSGYQALFFVPTTLLSSQHFKS
LKERFDKFNIDVRRLDRFTSTKEKSNIIKNLNDAKPMVVIGTHSLLSLKAANLGLIIIDE
EHKFGVKQKEKLKEISEHSHILSMSATPIPRSLNMALSKVKSYSTLLTPPLDRMDVRTFV
KEWDEKLIKEVILREIRRGGQIFYVHNLISDMPSMERELKALIPNLKVLTLHSKIDAKTT
EDEMMKFANKEYDLLLCTSIIESGIHLPNANTIIIDDANKFGIADLHQLRGRVGRSNKQG
YCYFLVGDKNELSSEAVKRLIALESNSFLGSGALLAYHDLEIRGGGNLLGEAQSGHIEAI
GYTLYLKMLEDEINLLLNHQTKEMTQIDIKLSVNAFLNTDLINEDRIRLELYRRLSKCQN
VSEVYELGAEIEDRFGKLDAYTKQFLDIIVIKILACEQGFKSVSNYEQNISLTKIDDTKV
ILKSRSKDDDDVLAQTLAYLRKNSS
NT seq
2958 nt
NT seq
+upstream
nt +downstream
nt
gtgcaagcaaggatttatgagttttttaaatttaataaaaatatatacgatatcttagta
acaaatgacgataaagaggcaagagaagcttatgatagtgcttcttacgccggactcact
tgttttgttttaccggattttagagctatacaaggtgatgatttaagagcttttaatgca
gaacttttagaaataagtaaagttctaactgaattttataaaagtgattcaaaaaataag
ctgcttatatctcctattcgtacgcttttaaataaacttccaactagctcaaatttaaaa
accaaaactataagttacgcagatacgttaaatctaactgagtttaaagaagaaatgctc
ggtttcggatataatttcgtagatatcgtagaaggcagaggcgaaataagaataagcggc
gaaattatcgatatatttagcgtctcagaagataagccaattagaattttgctggatata
gatactgtttgtagtataagatactttgatcttgatactcaaaaatcagacaaaaacgag
cttacttcagttattataactccgtttttggcttcattaaatagtgatgaattaaaagat
gtaaatgataaattagaaaatatcgattcaaatgctttgataaaagatatcaactcattt
ggtttttgggttatagacggatttagcgattattttgagagttttaaaactgttttggca
atgcaaatagacatagatgatatcgtttctaatagagatctaagttttttaaaagctgct
cctattttaccagaaccaaaaatttataaagatttagaagttagtgtaaatagtgatctt
atcaaatttcacggcagtaaaaaaattcaaattttgagctcaaacgagagtagttttaat
gctttaaatttagaaaatagttcaaacgtagagcttgtcataagcaatctgatattaaat
atagctagtaaagacgaattgatactatctttaaataaaagagtcaaaaaacaaagagtt
aaaaaagcaagtttagttatagatgaattgaaaaccggtgattttgtcgtacatagtgat
tatggtataggtaaatttttaggacttgagcttatcacggttttaggtagtaaaaaagag
tttgtagttatcgcttatcaaaataacgataaacttcttttgccggttgaacatctaaat
atgatagatcgttatatagcaggaagcggcgccgtagttagcgtagataggctcggcaag
gctagtttcgcgaaaatcaaagaaaaagttagagaaaagctatttgttatagctaataaa
atcatagctctagctgcaaaaagagagttgatagaaggtataagattaaacgcggatagt
cagtatgctaagtttaaatccagcgccggatttatatacacggatgaccaagaaaaagca
gtaaatgatatacaaaatcatctaaagagcggacgagttatggatatgcttttaagcggc
gatgtaggttttggtaaaaccgaagttgctatgaacgccatatttttatgcgtaaaaagc
ggctatcaggctctattttttgtaccaactactttgcttagctctcagcatttcaaaagt
ttaaaagagcgttttgataaatttaacatagatgtacgcagactagatagatttactagc
acaaaagaaaaatcaaatattataaaaaatttaaatgatgcaaaaccgatggttgtcatc
ggcactcattctcttttatctttaaaagcggcgaatttgggacttataattatagacgaa
gagcataaattcggtgttaaacaaaaagaaaaactaaaagagataagcgaacactctcat
atactttctatgtcggctactcctattccaagaagtttaaatatggctttaagtaaagtt
aaaagttatagcactcttttaacgccgccgcttgatagaatggatgtaagaacatttgtc
aaagagtgggatgagaagcttataaaagaggttatattaagagagattagaagaggaggt
cagatattttacgtgcataatttaatatctgatatgccaagtatggagcgagaattaaaa
gctttgataccgaatttaaaagttttaacgcttcatagtaagatagacgcaaaaactacc
gaagatgagatgatgaaatttgcaaataaagagtatgatctgcttctttgcacaagtatc
atagaaagcggtattcatttgccaaatgctaatactattataatcgatgacgcaaataaa
tttgggattgcggatttgcatcagttaagaggaagagtcggtaggagcaataaacaaggc
tattgctactttttggtcggcgataaaaatgagcttagtagtgaagccgtaaaaaggctt
attgctcttgaaagtaattcgtttttgggctccggagcacttcttgcttatcatgattta
gaaattagaggtggcgggaatttgctcggagaggctcaaagcggtcatatagaagctatc
ggatatacgctttatctaaaaatgcttgaagatgagataaacttgcttttaaatcatcaa
acaaaagagatgactcaaatagatataaaacttagcgtaaatgcatttttaaatactgat
ctcataaatgaagatagaatcaggcttgaactatacagacgtcttagcaaatgccaaaat
gtaagtgaagtttatgagctaggagcagaaattgaagatagatttggcaaacttgatgct
tacactaagcaatttttagatattatagtcataaagattttggcctgcgaacaagggttt
aaatctgtgagtaattatgaacaaaatataagcttaactaaaattgacgatacgaaggtt
attttaaagtcaaggagtaaagatgatgatgacgtacttgcacaaactctggcatattta
agaaagaattcatcatga
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