KEGG   Caulobacter flavus: C1707_21175
Entry
C1707_21175       CDS       T05702                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
cfh  Caulobacter flavus
Pathway
cfh03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:cfh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    C1707_21175 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cfh03400]
    C1707_21175 (ligD)
Enzymes [BR:cfh01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     C1707_21175 (ligD)
DNA repair and recombination proteins [BR:cfh03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     C1707_21175 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Other DBs
NCBI-ProteinID: AYV48569
UniProt: A0A2N5CP50
LinkDB
Position
complement(4645699..4648347)
AA seq 882 aa
MAAAKLAKYQEMRDFSRTAEPSGNKKVLPSKALRFVIQKHAASHLHFDLRLEYDGTFKSW
AVPKGPSLDPADRRLAMEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWAPEKGFEKI
GAALAKGELKFVMEGGRMHGSWVIVRTKRDSKGRASWMLIKHRDEAAEVGNPNGPSDDDR
SIASGRNLAEITNGKGRAATPFMTGAGTEAGAVWQSDRDDSAPAGLIAPAKAGKAVKARR
VETLPDFVEPQLTKPVDKPPNGPGWAHEIKFDGYRMQLRTVGGQATLRTRKGLDWSAKFP
EITAAGAMLGDVIIDGEIVALDETGAPDFAALQAAISSGDTKALVFFVFDMLFEAGEDLR
DLPLAERKDRLAAHVDASGPTLRYVDHFITGGDAVLLSACRMDLEGIVSKRLDAPYRSGR
GEAWTKSKCRAGHEVVIGGYTTTNGAFRSLIAGVFREGELVHVGRIGTGFGRDKVAVILP
RLKALETKTSPFVGKEGPSRAGRQGEVHWVRPELVAEIEYEGFTADGQLRQAAFKGLRED
KPAAEVETIEPAPAITPLAEPKAQKAKPAIGTVKVGAASVTPRGSAVVMGQTISNAGKTL
WPDAGDDRPVTKLELARYYEAVGGWMIEHLRGRPCSMIRMPDGIEGQQKFFQRHTGQGQS
SLISEVTVWGDRKPYLQFDSVEALVAAAQVGALELHPWNSEPFLPEQPGRLVFDLDPAPD
VPFEWVIEGAREVRDRLQDLGLTAFCKTTGGKGLHVVTPLLAEGLNWDIAKAFARDVCKA
MAADDPDRYLIVMSKAKRTGKIFLDYLRNDRMATAVAPLSPRGRPGAPVSMPIAWTQVKK
GLDPAKFTLRTVPGLLPKLTAWDDYCDGERPLETAIARLGKV
NT seq 2649 nt   +upstreamnt  +downstreamnt
atggccgccgctaaactcgccaagtatcaggagatgcgcgacttttcccgcacggccgag
ccgtcgggcaataagaaggtcttgccctccaaggccctgcgcttcgtgatccagaagcac
gcggcctcgcacctgcatttcgacctgcggctcgagtacgacggcacgttcaagtcctgg
gccgtccccaaggggccttcgctcgatccggccgatcggcgcctggccatggaggtggag
gaccatccgctcgactacggcgacttcgaagggacgatccccaagggccagtacggcggc
ggcacggtgatgctgtgggaccgtggctactgggcgcccgaaaagggcttcgaaaagatc
ggcgcggccttggccaagggcgaactgaagttcgtcatggaaggcgggcgcatgcacggc
tcctgggtcatcgtgcgcaccaagcgcgacagcaagggccgggccagctggatgctgatc
aagcatcgcgacgaggccgccgaggtcggcaatcccaacggtcctagcgacgacgaccgg
tcgatcgcctcgggtcgcaacctggccgagatcaccaacggcaagggcagggcggccacc
cccttcatgaccggcgcgggaaccgaggccggcgcggtctggcagagcgatcgcgacgac
agcgccccggccggcttgatcgcgcctgcgaaggccggcaaggccgtcaaggccaggcgc
gtcgagaccctgccggacttcgtcgagccccagctcaccaagcccgtggacaagccgccc
aacgggccgggctgggctcacgagatcaagttcgacggctatcgcatgcaactgcgcacg
gtcggtgggcaggcgaccttgcgcacccgcaaggggctggactggtcggccaagtttccg
gaaatcaccgccgctggggccatgctgggcgacgtcattatcgacggcgagatcgtcgcc
ctggacgagaccggcgcgcccgacttcgccgcccttcaggcggcgatctcgtcgggcgac
accaaggctctggtcttcttcgtattcgacatgctgttcgaggcgggcgaggacctgcgc
gatctgccgctcgccgaacgcaaggatcgcctcgccgcccatgtcgatgcctccggtccg
accttgcgctatgtcgatcacttcatcaccggcggggacgcggtcctgctgtcggcctgc
cgcatggacctggagggcatcgtctccaagcgtctggacgcgccctatcgctcgggccga
ggcgaggcctggaccaagtcgaagtgccgggccggccacgaggtggtgatcggcggctat
acgacgaccaacggcgctttccgctcactgatcgccggagtgttccgcgagggcgaactc
gtccatgtcggccggatcggcaccgggttcgggcgcgacaaggtcgccgtcatcctgcct
cggctgaaggcgctggagaccaagacctcgcccttcgtgggcaaggagggacccagtcgc
gcgggacgccagggcgaggttcattgggtgcggccagaactagtcgccgagatcgaatac
gagggcttcacggccgatggccaactacgccaggccgccttcaagggcctgcgtgaggac
aagccggccgccgaggtcgagaccatcgagccggcgccggcgatcacccccctggccgag
ccgaaggcgcagaaggcaaagcccgccattggaacggtcaaggtgggcgcggccagcgtc
acgccgcggggctcggctgttgtcatgggccagaccatctccaacgccggcaagacgctg
tggccggacgccggcgacgaccggccggtcaccaagctggagctggcgcgatattacgag
gcggtcggcgggtggatgattgagcacctccgcggccggccttgctcgatgatccgcatg
cccgacggcatcgagggtcagcagaagttctttcagcgtcacaccggccagggacagtct
tcgctgatttcggaggtcaccgtctggggcgaccgcaagccctatctgcagttcgacagc
gtcgaagccctcgtcgccgccgcccaggtcggggccttggaactgcacccctggaatagc
gaacccttcctgcccgagcagccggggcggctggtcttcgaccttgatccggcgccggac
gtgccgttcgaatgggtgatagagggcgcgcgggaggtgcgcgatcgcttgcaggacctg
gggctgacggccttctgcaagaccaccggcggcaagggcctgcacgtggtcacgccgctc
ttggccgaagggctcaactgggacatcgccaaggccttcgcccgggatgtctgcaaggcc
atggccgccgacgatcccgatcgctacctgatcgtgatgagtaaggccaagcggaccggg
aagatcttcctggactacctgcgcaacgaccgcatggccaccgcggtcgcgcccctctct
ccgcgaggccgtcccggcgcgccggtgtcgatgccgatcgcctggacccaggtgaagaag
ggccttgatccggccaagttcacgctgcgcaccgtcccgggcttgctgcccaagctgacg
gcgtgggacgactattgcgacggagaacgcccgctcgagaccgccatcgcgcggctcggc
aaggtctga

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