Caulobacter flavus: C1707_21175
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Entry
C1707_21175 CDS
T05702
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cfh
Caulobacter flavus
Pathway
cfh03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cfh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
C1707_21175 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cfh03400
]
C1707_21175 (ligD)
Enzymes [BR:
cfh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
C1707_21175 (ligD)
DNA repair and recombination proteins [BR:
cfh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
C1707_21175 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AYV48569
UniProt:
A0A2N5CP50
LinkDB
All DBs
Position
complement(4645699..4648347)
Genome browser
AA seq
882 aa
AA seq
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MAAAKLAKYQEMRDFSRTAEPSGNKKVLPSKALRFVIQKHAASHLHFDLRLEYDGTFKSW
AVPKGPSLDPADRRLAMEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWAPEKGFEKI
GAALAKGELKFVMEGGRMHGSWVIVRTKRDSKGRASWMLIKHRDEAAEVGNPNGPSDDDR
SIASGRNLAEITNGKGRAATPFMTGAGTEAGAVWQSDRDDSAPAGLIAPAKAGKAVKARR
VETLPDFVEPQLTKPVDKPPNGPGWAHEIKFDGYRMQLRTVGGQATLRTRKGLDWSAKFP
EITAAGAMLGDVIIDGEIVALDETGAPDFAALQAAISSGDTKALVFFVFDMLFEAGEDLR
DLPLAERKDRLAAHVDASGPTLRYVDHFITGGDAVLLSACRMDLEGIVSKRLDAPYRSGR
GEAWTKSKCRAGHEVVIGGYTTTNGAFRSLIAGVFREGELVHVGRIGTGFGRDKVAVILP
RLKALETKTSPFVGKEGPSRAGRQGEVHWVRPELVAEIEYEGFTADGQLRQAAFKGLRED
KPAAEVETIEPAPAITPLAEPKAQKAKPAIGTVKVGAASVTPRGSAVVMGQTISNAGKTL
WPDAGDDRPVTKLELARYYEAVGGWMIEHLRGRPCSMIRMPDGIEGQQKFFQRHTGQGQS
SLISEVTVWGDRKPYLQFDSVEALVAAAQVGALELHPWNSEPFLPEQPGRLVFDLDPAPD
VPFEWVIEGAREVRDRLQDLGLTAFCKTTGGKGLHVVTPLLAEGLNWDIAKAFARDVCKA
MAADDPDRYLIVMSKAKRTGKIFLDYLRNDRMATAVAPLSPRGRPGAPVSMPIAWTQVKK
GLDPAKFTLRTVPGLLPKLTAWDDYCDGERPLETAIARLGKV
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgctaaactcgccaagtatcaggagatgcgcgacttttcccgcacggccgag
ccgtcgggcaataagaaggtcttgccctccaaggccctgcgcttcgtgatccagaagcac
gcggcctcgcacctgcatttcgacctgcggctcgagtacgacggcacgttcaagtcctgg
gccgtccccaaggggccttcgctcgatccggccgatcggcgcctggccatggaggtggag
gaccatccgctcgactacggcgacttcgaagggacgatccccaagggccagtacggcggc
ggcacggtgatgctgtgggaccgtggctactgggcgcccgaaaagggcttcgaaaagatc
ggcgcggccttggccaagggcgaactgaagttcgtcatggaaggcgggcgcatgcacggc
tcctgggtcatcgtgcgcaccaagcgcgacagcaagggccgggccagctggatgctgatc
aagcatcgcgacgaggccgccgaggtcggcaatcccaacggtcctagcgacgacgaccgg
tcgatcgcctcgggtcgcaacctggccgagatcaccaacggcaagggcagggcggccacc
cccttcatgaccggcgcgggaaccgaggccggcgcggtctggcagagcgatcgcgacgac
agcgccccggccggcttgatcgcgcctgcgaaggccggcaaggccgtcaaggccaggcgc
gtcgagaccctgccggacttcgtcgagccccagctcaccaagcccgtggacaagccgccc
aacgggccgggctgggctcacgagatcaagttcgacggctatcgcatgcaactgcgcacg
gtcggtgggcaggcgaccttgcgcacccgcaaggggctggactggtcggccaagtttccg
gaaatcaccgccgctggggccatgctgggcgacgtcattatcgacggcgagatcgtcgcc
ctggacgagaccggcgcgcccgacttcgccgcccttcaggcggcgatctcgtcgggcgac
accaaggctctggtcttcttcgtattcgacatgctgttcgaggcgggcgaggacctgcgc
gatctgccgctcgccgaacgcaaggatcgcctcgccgcccatgtcgatgcctccggtccg
accttgcgctatgtcgatcacttcatcaccggcggggacgcggtcctgctgtcggcctgc
cgcatggacctggagggcatcgtctccaagcgtctggacgcgccctatcgctcgggccga
ggcgaggcctggaccaagtcgaagtgccgggccggccacgaggtggtgatcggcggctat
acgacgaccaacggcgctttccgctcactgatcgccggagtgttccgcgagggcgaactc
gtccatgtcggccggatcggcaccgggttcgggcgcgacaaggtcgccgtcatcctgcct
cggctgaaggcgctggagaccaagacctcgcccttcgtgggcaaggagggacccagtcgc
gcgggacgccagggcgaggttcattgggtgcggccagaactagtcgccgagatcgaatac
gagggcttcacggccgatggccaactacgccaggccgccttcaagggcctgcgtgaggac
aagccggccgccgaggtcgagaccatcgagccggcgccggcgatcacccccctggccgag
ccgaaggcgcagaaggcaaagcccgccattggaacggtcaaggtgggcgcggccagcgtc
acgccgcggggctcggctgttgtcatgggccagaccatctccaacgccggcaagacgctg
tggccggacgccggcgacgaccggccggtcaccaagctggagctggcgcgatattacgag
gcggtcggcgggtggatgattgagcacctccgcggccggccttgctcgatgatccgcatg
cccgacggcatcgagggtcagcagaagttctttcagcgtcacaccggccagggacagtct
tcgctgatttcggaggtcaccgtctggggcgaccgcaagccctatctgcagttcgacagc
gtcgaagccctcgtcgccgccgcccaggtcggggccttggaactgcacccctggaatagc
gaacccttcctgcccgagcagccggggcggctggtcttcgaccttgatccggcgccggac
gtgccgttcgaatgggtgatagagggcgcgcgggaggtgcgcgatcgcttgcaggacctg
gggctgacggccttctgcaagaccaccggcggcaagggcctgcacgtggtcacgccgctc
ttggccgaagggctcaactgggacatcgccaaggccttcgcccgggatgtctgcaaggcc
atggccgccgacgatcccgatcgctacctgatcgtgatgagtaaggccaagcggaccggg
aagatcttcctggactacctgcgcaacgaccgcatggccaccgcggtcgcgcccctctct
ccgcgaggccgtcccggcgcgccggtgtcgatgccgatcgcctggacccaggtgaagaag
ggccttgatccggccaagttcacgctgcgcaccgtcccgggcttgctgcccaagctgacg
gcgtgggacgactattgcgacggagaacgcccgctcgagaccgccatcgcgcggctcggc
aaggtctga
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