Chitinophaga filiformis: MYF79_04960
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Entry
MYF79_04960 CDS
T08225
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cfil
Chitinophaga filiformis
Pathway
cfil03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cfil00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MYF79_04960 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cfil03400
]
MYF79_04960 (ligD)
Enzymes [BR:
cfil01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MYF79_04960 (ligD)
DNA repair and recombination proteins [BR:
cfil03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MYF79_04960 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
mRNA_cap_enzyme
Myotub-related
Motif
Other DBs
NCBI-ProteinID:
UPK70647
LinkDB
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Position
1186839..1189379
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AA seq
846 aa
AA seq
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MSLRTYDEKRNFNVTSEPKGAKKKSAGKQHIFVIQRHHASRLHYDFRLEVDGVLKSWAVP
KGPSMNPSDKRLAMQVEDHPYDYKDFEGVIPEGNYGAGFVYVWDKGNYELLHEDGKDFDK
EANKEIREGNLKIRLKGKKVKGEFALVKMKNSDDNAWLLLKHKDDYAVKEAYDSENYTPQ
RIKDRGLKEKEKMKSTKKKVSPAKVKAAPTKKEQFTPMMATLVDKPFSREGWLFETKWDG
YRAIADVRKGKVELYSRNHLSFNKDYSKIVSALEDLSHDVVLDGEVVILKKDGTSDFQSL
QNYKNDASGNLVYVVFDMLQLDGQDLKALPLIQRKELLKDVVKQLGSKTVIYSEHVLDDS
EKLYKTAQQKGWEGIIAKEAESLYAEGRRSLSWLKIKIVDEQEAIICGYTDPQGSRKKIG
SLVLGVYDDNNELKYVGNCGGGLNGALINELYDKMQPYRQKTSPFREKVKTNTPVTWIKP
ELVCQVKFSSWTSDRHLRQPIFLGLRKDKPATEVHKETAKSTRMATKKAAAQAAPPPART
HEKERVVTLNSKKVTLTNQQKIFWPDEKITKGTLLDYYIEMADYVLPFLKDRPLSLHRFP
NGINDPGFYQKDIDTAAAPDWLKTVQLHAASASRDVDYLVCNNAATLAYMVNLGCIEINP
WLSRIKNLDNPDYLVLDLDPENIAFKHVVETAQAIKALLDQLGLTAFCKTSGASGLHVYV
PTGAKYNYDTCRLFAEYVAKQVQQELPDITSVIRNKSKRNKKVYIDYMQNSRGQTIASPY
SVRPKPGATVSAPLKWDELTDDLAIADFHIGNMADRIRDVGDLWKDIDKTKNDLRKVIQQ
IEAAAQ
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgagaacctacgatgagaaacgcaatttcaatgtcacttccgagcctaaaggc
gcgaagaaaaagagtgcgggcaaacagcacatcttcgtcatccagcggcaccatgcttcc
cgcctgcactacgattttcgcctggaagtagatggcgtgctgaaaagctgggcagtacct
aaaggcccctccatgaacccgtccgataaaagactggccatgcaggtggaagaccaccca
tacgattataaagactttgaaggcgtcatccccgagggaaattacggcgcaggcttcgtc
tatgtatgggataaagggaattacgaactgctgcatgaagatggaaaagatttcgataaa
gaagctaataaagagatcagggaaggcaatctgaaaatacgcctgaagggaaagaaagtg
aagggagaatttgccctcgtcaaaatgaagaactcagacgataatgcctggttgttgctg
aaacataaagacgactacgctgtaaaggaagcgtacgacagtgagaactatacgccgcag
cgtattaaggacagaggcctgaaggaaaaagaaaagatgaagtccactaaaaaaaaagta
tcaccggcaaaagtaaaggcagcgcccactaagaaagagcagtttacgcccatgatggcc
acattggtggataaacccttcagccgggaaggctggctgtttgaaaccaagtgggatggt
taccgggctattgctgacgtgcgtaaagggaaagtggaactgtattcaaggaatcatttg
tcttttaataaagactattccaaaatagtaagtgcgctggaagacctgtcgcacgatgtt
gtactggatggtgaagtggtgatcctgaagaaagacggtacttccgacttccagtcatta
cagaactataagaacgacgcttccggcaacctggtgtacgtggtttttgacatgctgcag
ctggatgggcaggacctgaaggccttgccgcttattcagcgtaaagagctgttgaaggat
gtggttaaacagctcggcagcaaaacggtgatctactcagagcatgtgctggacgatagt
gaaaaattgtacaaaacggcacaacagaaaggctgggaaggtatcattgccaaagaggct
gaaagcctctatgccgaaggccgcaggtctttgtcatggctgaagattaagatcgtggat
gaacaggaagctatcatctgtggatatacagatccgcagggtagcagaaagaaaatagga
tcactggtgctcggcgtttatgatgataacaacgaactgaaatatgtcggtaattgtggt
ggcggactaaatggtgcactgatcaatgagctgtatgataagatgcagccttaccggcaa
aagacttccccgttcagggaaaaggtaaagacgaacacgcctgttacctggataaaaccg
gaactggtatgccaggtgaaattctcgtcctggacgagcgacaggcacctgcgtcagcca
atattcctgggactaagaaaggataaaccggcaacagaggtgcataaggaaactgcaaaa
tctaccaggatggccacgaagaaagccgcagcgcaggctgctccccctcccgcacgtaca
catgaaaaggaacgtgtagtaacgctgaatagcaaaaaggttacattgaccaaccagcag
aaaatattctggccggatgaaaagattacgaaaggtacgctgctggactattatattgag
atggccgattatgtactgcctttcctgaaagaccggccattaagcctgcatcgtttcccc
aatggtattaatgatcccggcttctatcaaaaggatattgatacggcagcggctcccgac
tggctgaagacggtacagttgcatgcggcatctgcctcacgggacgtggattacctggta
tgcaacaatgctgctacactggcgtatatggtcaacctgggatgtatagagatcaatccc
tggttgtcgcggataaaaaatctcgacaacccggattacctggtattagacctcgatcct
gaaaatatcgcttttaaacatgtggtggaaacggcacaggctattaaggccctgctggat
caattggggctgactgcattttgtaaaacatcaggcgcctcaggcctgcatgtttatgtg
ccgacaggggctaaatacaattatgacacctgccgcctgtttgccgaatatgtagcaaag
caggtacagcaggagttgccagacatcacgagcgtgatccgcaataaatcgaaacggaat
aaaaaagtgtatatagactatatgcagaacagccgcgggcagaccatcgcctctccatat
tccgtacgtccgaagccgggagctaccgtttccgcaccgttgaaatgggatgagctgacc
gatgatcttgccattgctgattttcatatcgggaacatggcagacaggatcagggacgtg
ggcgacttatggaaagacatagacaaaacaaagaatgatctgcgtaaagtgatccagcag
attgaggctgccgcacaatga
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