Chitinophaga filiformis: MYF79_05780
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Entry
MYF79_05780 CDS
T08225
Name
(GenBank) RNA polymerase sigma-70 factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
cfil
Chitinophaga filiformis
Pathway
cfil02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
cfil00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
MYF79_05780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cfil03021
]
MYF79_05780
Transcription machinery [BR:
cfil03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
MYF79_05780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
GerE
HTH_Mga
Sigma70_ECF
PCI
HTH_11
HTH_38
HTH_23
HTH_24
Sfi1
TnsD
HTH_40
RlaP
Motif
Other DBs
NCBI-ProteinID:
UPK70806
LinkDB
All DBs
Position
complement(1380486..1381157)
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AA seq
223 aa
AA seq
DB search
MQASYIAAFSGTASSFVSRNKDKTYFCTMPENAQLQKLLQENEEAFMETLFRTYFSFVCK
TIYRIVQDNATAEDLAQDVFIKIWNRRSELQQVYFKAYLHRAGINMALDYIDKNKRRGVH
MPIEDYMEPVQAAPQGGSLQQTTRHIQQAIDKLPEKCREIFILSRYEELSYKEIASTLNI
SVKTVENQMITALKKLRVSLQDYLHVIVLFLAGAAIYPLLLQF
NT seq
672 nt
NT seq
+upstream
nt +downstream
nt
atgcaggctagctacatagcagcattttcaggtactgccagcagttttgtgagcaggaat
aaggacaaaacctatttttgtactatgccggaaaatgcacaactacaaaaacttttacag
gaaaatgaagaggccttcatggaaacactcttcaggacctatttttcctttgtctgtaag
acaatttaccgcattgttcaggacaatgccaccgctgaagatcttgcacaggatgtgttt
ataaagatctggaaccgccgctccgagcttcagcaggtttattttaaggcttatttgcat
agagcaggtattaatatggcactggattatattgataaaaacaaacgcagaggggttcat
atgcctatagaggattatatggaacctgttcaggcagccccacaaggaggcagcctgcag
caaaccacccggcatattcagcaggctattgacaaactccctgagaaatgtcgggaaata
ttcatactcagccgttatgaagagctctcctacaaggaaattgcgagcacactcaatata
tcagttaaaacagtggaaaaccagatgatcaccgccctgaaaaagctcagggtgtcactg
caggactacctgcatgtgatcgtactatttctggcaggcgccgctatttatcctttactt
ttacaattttaa
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