Cytobacillus firmus: NAF01_16525
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Entry
NAF01_16525 CDS
T08260
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cfir
Cytobacillus firmus
Pathway
cfir03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cfir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NAF01_16525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cfir03400
]
NAF01_16525
Enzymes [BR:
cfir01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NAF01_16525
DNA repair and recombination proteins [BR:
cfir03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NAF01_16525
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
mRNA_cap_enzyme
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
URT69402
LinkDB
All DBs
Position
3276057..3277895
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AA seq
612 aa
AA seq
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MRPMLPTLTFDVPEEKEWLFEAKYDGFRGILHWDKEPRLTSRNDKPLLNLFPEINAFLEQ
HKDKFEQYLPLILDGEVVLLENAYKAHFGSIQVRGRMRSEKKILEKAKTAPCRFLVFDIL
MINGRKIADKEYSARKSELEALFKSCDLPLKPDEKDSRLIQLVPPYPSFKELWEKIVLHD
GEGIVAKQMKNKWEEGKRTSLWLKFKNWKYVSCFITAYEKSNGYFYAGIYQGDTVIGIGQ
FLFGLKPDEKQALFQIIKENKADENSQFIYVEPAICVDVKYLEIYEEQMREPHFHQFRFD
LKPDACTYDQFIQQQKNLPPEIEITHPEKPLWETPAIQKIDYIHFLREVAPYMLPFLKNR
LLTVIRYPHGIFAEPFYQKNCPDYAPDFVETEMSEGIDYIVCNNLKTLLWLGNQLAFEYH
IPFKTIASSGPSEIVFDLDPPSREAFPLAIKAAVYIKEVLDQLKLISFVKTSGNKGLQVY
IPLPENAYTFDDTRLFTEFIAQYLLNKDPDSFTIERLKKHRGGRLYVDYIQHAEGKTIIA
PYSPRGNKSATVAAPLFWEEVNEKLTMERFQITNMIKRINSDGDPFNTYFQTKEIQPFSP
VLEFLKEHNKKG
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgagacctatgcttcctacattaactttcgatgttccggaagagaaagaatggctgttt
gaagcaaaatatgatggttttagagggatcctgcactgggacaaggaacccagactgaca
agcagaaacgataaacctttattaaaccttttcccggagattaatgcttttttggaacag
cacaaagataaatttgaacaataccttccgcttatattagatggagaggtagtcttgctg
gaaaatgcctataaagctcattttgggtcgattcaggtcagggggagaatgagatctgaa
aaaaagattcttgagaaagccaaaacagctccctgccgttttcttgtttttgacatcctg
atgataaatggcagaaaaattgccgataaagagtactctgccagaaaatcagagcttgaa
gctttgtttaaaagctgtgatttgcccttaaaacctgacgagaaggactccaggctgatt
caattagttcccccataccccagttttaaggagctatgggaaaaaatcgttcttcatgac
ggtgaaggaattgtggccaagcagatgaagaataaatgggaagaaggaaagagaacctct
ttatggctgaaattcaaaaactggaaatacgtttcctgttttatcactgcttatgaaaaa
tctaatggatacttttatgccgggatatatcagggggatactgtcataggaatcggacag
tttctttttggcttgaagcctgatgaaaaacaagccttatttcaaataattaaagaaaat
aaagcagatgaaaacagccaattcatatatgtagaacctgcaatctgtgtggatgttaaa
tacctcgagatctatgaggagcaaatgcgggagccgcactttcaccagtttcgtttcgat
ttgaagcctgatgcctgtacatatgatcaatttatacagcagcagaaaaacctgcctcca
gaaatagaaatcacccatccggaaaaaccattatgggaaactccggctattcaaaagatt
gattacattcattttttaagagaagttgcaccctatatgctgccatttttaaaaaacagg
cttttaaccgttatccggtatccgcatgggatttttgcagagcccttctaccagaaaaat
tgcccggattacgcaccggattttgtcgaaacggaaatgtcagaaggtattgattatatt
gtctgcaataatctaaaaacattgttgtggcttggcaaccagcttgcttttgaatatcat
ataccgttcaaaacgatcgcaagctccggaccaagtgaaatcgtttttgatttggacccg
ccgtcccgggaggcttttcctctcgccattaaagccgctgtttatattaaagaggtgctg
gatcagcttaaattaatcagcttcgttaaaacatcaggcaataaagggctgcaagtttat
attcctttgccggaaaatgcttatacctttgatgatacacggcttttcactgagttcatt
gcccagtatctcctaaacaaagacccggattcttttacaattgaaaggttgaagaaacac
cggggtgggcggctttatgtggactatatccagcatgcagaaggtaagacgattatagcc
ccttattcacccagaggaaataaatcggcgactgttgcagctccgctgttttgggaggaa
gttaacgaaaagctcactatggaaaggtttcaaataaccaatatgattaaaagaataaac
agtgatggcgatccttttaacacttattttcaaacaaaggaaattcagccgttttcacca
gtgctggagtttttaaaggaacataataaaaaaggataa
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