Colletotrichum fioriniae: CFIO01_02253
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Entry
CFIO01_02253 CDS
T04796
Name
(GenBank) transcription factor tfb2
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
cfj
Colletotrichum fioriniae
Pathway
cfj03022
Basal transcription factors
cfj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cfj00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
CFIO01_02253
09124 Replication and repair
03420 Nucleotide excision repair
CFIO01_02253
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cfj03021
]
CFIO01_02253
03400 DNA repair and recombination proteins [BR:
cfj03400
]
CFIO01_02253
Transcription machinery [BR:
cfj03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
CFIO01_02253
DNA repair and recombination proteins [BR:
cfj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
CFIO01_02253
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-ProteinID:
EXF86194
UniProt:
A0A010S602
LinkDB
All DBs
AA seq
494 aa
AA seq
DB search
MSVSSGQSLQLADYLEKLPGTTFRKLYLQPSTAFAIFRRMIPPLAKTIVMAILYMPQPML
LEDLDFWVKPDSRRQKDQAISTLRSLHILQITPPSKERPQEMQLTTNFKNSLRLALEGGG
SHNSFGVPSSLPVPPEITVPFLDRYARRKWEDILHYIVNTVNPGGADVSGPKASVKDLLA
AGALVRRANGAVGITQAGFTFLLQEANAQVWTLLLLWLEATEHASAVTGMESTDALSFLF
LLASLELGRAYDTQALTEPRRNMLPSLLDFGLIYIPQHKTQQYFPTRLATTLTSSSSALR
SAGAGFSAALAAATGPRPSNGLTPGGSEENKGGSIIVETNYRIYAYGQTPLQIAVLSLFC
KLKLRFSDMVSGRLTRNSIRNAVERGITADQIISYLAAHAHEQMHRMAAVRNRPVLPPTV
VDQIRLWQLETERMTTTSGFLFRDFDSPREYEDIAGYAAEIGVLTWRNDKLGMFFASKHE
QIRDYLKLRKKAED
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtcagctcgggtcaatcgctccagctggccgactatttggagaagctgcccggc
acgacctttaggaagctgtacctgcaaccctctacggcctttgccatcttccgcaggatg
attccgccgctggcgaaaaccatcgtcatggctattctatacatgccgcagcccatgctg
ctagaggacctcgatttttgggtcaagccggattcaagaaggcaaaaagaccaggcaatc
tcgacccttcgcagcctacacatcctccaaatcacacctccctccaaagaacggccacaa
gagatgcagctcacgacaaacttcaaaaactcgctacggctcgcactcgaaggcggagga
tcccataactctttcggcgtgccctcctccctccccgtcccgcccgaaatcaccgtcccg
ttcctcgaccgctatgcccgccgcaagtgggaggacatcctccactacattgtcaacacc
gtgaaccccggcggcgccgacgtcagcggacctaaggcgtctgttaaggatctgctcgcc
gctggtgcgctcgtacgtcgcgccaacggtgccgtcggcatcacacaggccggcttcacc
ttcctcctccaggaggccaacgcccaggtctggaccctcctgctgctctggctcgaggcc
accgagcacgcctccgccgtcacgggaatggagagcaccgacgccctcagcttcctcttc
cttctcgcgagtcttgagcttggcagagcctacgatacccaggctctcaccgaaccacgg
cgcaacatgctccccagtcttctcgactttggcctcatctacattccccaacacaaaact
caacaatacttcccgacccgattggcaacgacgctcacgagcagctccagcgccctccgc
agcgcaggcgcaggcttctctgccgctctcgccgcagccactggtccacggccctccaac
ggcctgacccctggcggaagcgaggagaacaagggcggcagcatcatcgtcgagacgaac
taccgcatctacgcctatggccagacaccactccaaatcgccgtcctctcactcttctgc
aagctcaagctgcgtttctccgacatggtatcaggccgcctcacgcgtaactcgattcgc
aacgccgtcgagcgcggcatcacagccgaccagatcatctcgtacctcgccgcccacgcg
cacgaacagatgcaccgcatggccgcggtacgtaatcggcccgtcctaccgcccaccgtc
gtcgaccaaatccggctgtggcagctcgagacggaacgcatgacgaccacgagcggcttt
ttgttccgtgatttcgacagtcctagggagtacgaggacatcgcgggctacgcggcggaa
attggcgtattaacatggcgcaacgacaagcttggcatgttctttgctagcaaacacgag
caaattagggactacctcaagttgagaaagaaggctgaggattag
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