Colletotrichum fioriniae: CFIO01_04504 Help Entry CFIO01_04504      CDS       T04796                                  Name (GenBank) RNA helicase   KO K14326   regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] Organism cfj  Colletotrichum fioriniae Pathway cfj03013   Nucleocytoplasmic transport cfj03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:cfj00001]  09120 Genetic Information Processing   09122 Translation    03013 Nucleocytoplasmic transport     CFIO01_04504    03015 mRNA surveillance pathway     CFIO01_04504  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:cfj03019]     CFIO01_04504 Enzymes [BR:cfj01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      CFIO01_04504     5.6.2.5  RNA 5'-3' helicase      CFIO01_04504 Messenger RNA biogenesis [BR:cfj03019]  Eukaryotic type   mRNA surveillance and transport factors    Surveillance factors     Surveillance complex      CFIO01_04504    mRNA cycle factors     Common to processing body (P body) and stress granule      CFIO01_04504 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII DEAD UvrD-helicase Helicase_RecD Viral_helicase1 SLFN-g3_helicase PIF1 AAA_22 nSTAND3 AAA_16 SRP54 ATPase PhoH Motif Other DBs NCBI-ProteinID:  EXF78159 UniProt:  A0A010RJV5 LinkDB All DBs AA seq 1212 aa AA seqDB search YPPSSIPVCESRGDKLHPTKTPPFRRYLPTVSDFGSFLGAWIHQRKGTQPLPTSPCPVGV PLRFPHESPNFTYRYDVTIPLPDPPRIPLPYDLSQLRLCDAEPFENHKEAENQQREVEIR NTANMESAFKNLGNHLVSDSAAAIKAGDDVLTGIDADESLLYGKFGGRDGRRRADDDDNQ TELYDDDDVDSLTSMPVGAMKDLNIGRPKEEDRKLPPHACAYCGIHSPSSVVKCLGCNKW FCSARGNATSSHIVSHLVRARHKEVQLHPESTLGDTVLECYNCGTKNVFLLGFIPAKSDT VVVLLCRQPCAANTSSKDMSWDTSRWQPLIEERAFLTWLVATPSDAEQLRARHLTPPMIA KLEEMWKENATATVADLEKAASIDDDPHPVLLKYDDPYHYQNIFGPLVKMESDYDKKLKE AQSEDGLTVRWDYGLNNKHLVSFELHKIESGDVKLAVGDEMRLRYKGELRPAWEGVGYVI KIPNNQSDEVTLELRKAGNEKTVPTECTHNFSADYVWKATSYDRMQYAMKTFAVDDMSVS GYIFHKLLGHDVAVAPMKTTMPKKYSVPGLPDLNTSQIAAIKAVLSTPLSLIQGPPGTGK TVTSATIIYHLCKMNNGQVLVCAPSNVAVDQLCERIHRTGLKVVRLTAKSREDVESSVSF LALHEQVRMNDSNGELVKLAQLKTELGELSSQDEKKFKQLTKAAERDILHNADVVCCTCV GAGDPRLSKMKFRNVLIDESTQSAEPECMIPLVLGCKQVVLVGDHKQLGPVIMNKKAAKA GLNQSLFERLVNLRLVPIRLNIQYRMHPCLSEFPSNMFYDGSLQNGVTVKDRVRRDVDFP WPVVDMPMMFWSNLGNEEISASGTSYLNRTEASNVEKVVTRFFKAGVKPLDIGVITPYEG QRSYIVSTMQNTGTFKKESYKEVEVASVDAFQGREKDFIVLSCVRSNDNQGIGFLSDPRR LNVALTRAKYGLVIIGNPKVLSKHELWHHLLVHFKDRKCLVEGPLTNLQTSLLQFGKPKT AYRQKMSQPPQFNAGGGFPNGGGNRFNGAGSTRDFDSGSMMSYIPDDVSSIHSSLGGAGL NTTYPPIFSSFTPDQWPGLPGVPGSSRSGIKRGGRATESIAGESVANSEYTDASASVIGA KGVGQGGVSLGAGLQDAIHGMRPASYSHSDRLKHYVESGGRMGAGNGFGRRYDDDEKSVS TAFHSQIGGGFD NT seq 3639 nt NT seq  +upstreamnt  +downstreamnt tatccaccttcgagcatcccagtgtgtgagtcacgtggtgataagctacatcccaccaaa acaccaccctttcgccgctacctacctactgtgtcggactttggatctttcctgggtgct tggattcaccaacgaaaaggcacacaaccactcccgacaagtccatgccccgttggtgta cctttgaggtttccgcacgaatcccccaacttcacataccgatatgatgtgaccatcccc ctccccgatccacctcgaatcccccttccgtacgacctgagccaactgaggctctgcgac gccgaaccattcgagaaccataaagaagctgaaaatcagcagagagaagtagaaatccgg aacaccgcgaatatggagagcgccttcaagaatctcgggaaccacctagtttccgacagc gccgctgcgatcaaggcaggcgacgatgtcttgaccggtatcgatgccgatgagagcctt ctctacggcaaatttggcggccgcgacggtcgccgccgtgccgacgacgacgacaatcaa accgagctttacgatgatgacgatgtggacagcctgaccagcatgccggttggggctatg aaggatctcaatatcggaagacccaaggaggaagataggaagcttccccctcacgcttgc gcgtattgtggaattcattccccgagctccgtcgtcaagtgccttggctgcaacaagtgg ttctgcagcgcccgcggaaatgctacctccagccacattgtttcccatctggtccgggcg agacacaaggaggttcagcttcacccggagtctaccctgggtgatactgtacttgagtgc tacaactgcggaaccaagaacgtctttctcctgggcttcattcctgccaagtcggatacc gttgttgtgctgctatgtcgtcagccctgtgctgcgaacacatcctccaaggatatgagc tgggatacctctcgatggcagcccctgattgaggagagagctttcctgacctggctcgtc gcgacgccctccgatgccgagcagctccgcgctagacacctcaccccaccgatgattgcc aagttggaggagatgtggaaggaaaatgcgaccgctacggttgctgaccttgagaaggcc gctagcatcgatgacgatcctcaccccgtcctcctcaagtacgatgacccttaccactac cagaacatatttggccccctcgtcaagatggaatccgactacgacaagaagctcaaggaa gcccagtctgaggacggacttacggtccgctgggattacggcctgaataacaagcacctg gtcagctttgaactgcacaagatagagtcgggtgacgttaagctggccgttggcgacgaa atgcgattgcgatacaagggcgagctccgccctgcctgggagggagtcggctatgtcatc aagatcccgaataatcaatccgatgaagtcactctcgagctgcgtaaggccggcaacgag aagactgtgccgactgaatgcacccacaacttctcagcagactatgtctggaaggctacc tcgtatgatcgcatgcagtatgccatgaagactttcgccgtggacgacatgagtgtctcg ggttacattttccacaagctcctgggtcacgacgtcgctgtcgcgccgatgaagacgact atgcctaagaagtacagcgtccccggcctccccgacctcaacactagccagatcgccgcc attaaggctgtgctgtcgaccccgctcagcttgatccagggaccaccaggcaccggcaag actgttacttcggcaaccattatctaccacctgtgcaagatgaacaacggacaagttctt gtgtgtgcgccctccaacgtcgccgtcgaccagctctgtgagcgcatccaccgcaccggc ctcaaggtcgttcgtcttacagccaagtcccgagaggatgttgaatcctccgtgagcttc cttgctcttcatgagcaagttcgtatgaacgacagcaatggtgagcttgtcaagctagcg cagctgaagaccgagcttggcgaactatccagccaggacgagaagaagttcaagcagctc accaaggccgccgaaagagacattctacacaacgcagatgtcgtctgctgcacctgtgtc ggtgccggcgatcctcgtctgtcaaagatgaaattccgtaatgttctcattgacgagtcg actcaatcggccgagcccgagtgcatgattcctctcgttctcggatgcaagcaggttgtc ctcgttggtgaccacaagcagttgggccctgtcatcatgaacaagaaggctgccaaggct ggtctcaaccagtccttgtttgagcgtctcgtcaacttgcgcttggttcccattcgcctc aacatccagtaccgcatgcacccttgcttgtccgagttcccttccaacatgttctacgat ggatctctccagaacggtgttacagtcaaggatcgcgttcgccgcgatgtcgacttccca tggcctgtcgttgatatgccgatgatgttctggtccaaccttggcaatgaggaaatctcg gcatccggaacgtcctacctcaaccgtaccgaagcctccaatgtggagaaggttgtaacc cgcttcttcaaggctggcgtaaagcctttggacattggtgttattacgccgtacgagggt cagcgaagctacattgttagcaccatgcagaacactggcacgttcaagaaagagagctac aaggaagtcgaggttgcctccgttgacgccttccagggtcgtgagaaggacttcattgtt ctgtcctgtgttcgttccaacgacaaccagggcatcggtttcctttcggatccccgccgt cttaacgtcgccttgactcgtgctaagtacggccttgtcattattggtaaccccaaggtc ctttccaagcacgagctttggcaccacctccttgtccatttcaaggaccgtaagtgcttg gttgagggacctttgaccaatttgcagacctcgctgttgcagttcggaaagcccaagaca gcatatcgccagaagatgagccagccacctcaattcaatgccggtggcgggttccccaac ggcggcggcaaccgcttcaacggggctggctctacacgcgactttgactcaggctctatg atgtcctacattcccgacgacgtctcctcgatccacagctctctgggcggtgccggcttg aataccacttaccctcccatcttctcgagcttcacccctgatcaatggccaggcctcccc ggagtgcccgggtccagccgctccggcatcaagagaggaggtcgcgccactgagagcatt gcaggcgaaagtgtcgcaaactcggagtacacagatgctagcgctagcgtcatcggtgca aagggtgttggacagggcggtgtcagcctgggcgccggtctccaggacgcaattcacggt atgcgccctgcatcctacagccacagcgaccgcttgaagcattacgtcgagagtggtggt cgcatgggagccggcaatggcttcggccgtcgctacgacgacgacgagaagagcgtcagc accgccttccacagccagattggtggcggcttcgactga

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