Cellulomonas flavigena: Cfla_0817
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Entry
Cfla_0817 CDS
T01230
Name
(GenBank) DNA ligase D, 3'-phosphoesterase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cfl
Cellulomonas flavigena
Pathway
cfl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cfl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Cfla_0817
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cfl03400
]
Cfla_0817
Enzymes [BR:
cfl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Cfla_0817
DNA repair and recombination proteins [BR:
cfl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Cfla_0817
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ADG73727
UniProt:
D5UJY5
LinkDB
All DBs
Position
885752..887320
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AA seq
522 aa
AA seq
DB search
MRDFTRTAEPEGAPPAPSDAPERRFVVQRHRARRLHYDVRFEVDGVLVSWAVPKGPTLDP
TARRMAVHVEDHPLEYEAFEGVIPRGQYGGGDVIVWDRGTWRPYKTDDPAAEIRGGQLHA
ELFGERLRGKFLLVRRDGEGRGTEQWLMFHKRDEHAVEGWDAEDHPTSVVSGRTNDEVAA
HPDHLWRSGVPAAEAEVDTHPPVPEVAAPSDDELAALDELGTAGTWEVFGRRLKVTNLDK
ELFAGRDGGPPVTKRELLRYAARIAPVALPYLAGRALNMHRFPQGAGTAGFWHKQLPDHA
PAWVPRWDRPDVDPGESTTYLVVDEPAALVWAANFGALEWHAWTSRTSAPDLPTYALVDL
DPGPATAWEDLVLLAGLHRDAFEHVGVRAYPKLTGRRGIQVWVPITVGPSFDETRAWVER
LSRTVGKVVPDLVSWRWEVRERGGQARLDYTQNAVNKTLVAPYSPRAAAGAPVSAPITWD
ELDDPDLRSDTFTVRTVLDRLAERGDPFRGVLAADQHLPPLT
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgcgggacttcacgcgcacggccgagccggagggtgcgccgcccgcaccctcggacgcg
cccgagcgccggttcgtcgtgcagcggcaccgcgcgcggcggctgcactacgacgtgcgg
ttcgaggtcgacggggtcctggtgagctgggccgtgcccaagggaccgacgctcgacccg
accgcgcggcgcatggccgtgcacgtcgaggaccacccgctggagtacgaggcgttcgag
ggcgtgatcccgcgcggccagtacggcgggggagacgtcatcgtgtgggaccgcggcacg
tggcgcccctacaagaccgacgacccggcggcggagatccgcggcgggcagctgcacgcc
gagctgttcggcgagcggctgcgggggaagttcctgctggtgcggcgcgacggcgagggg
cgcggcacggagcagtggctgatgttccacaagcgcgacgagcacgccgtcgagggctgg
gacgccgaggaccaccccacgtccgtcgtctcgggccgcaccaacgacgaggtcgccgcg
caccccgaccacctgtggcgctcgggcgtcccggcggccgaggcggaggtcgacacgcac
ccgcccgtgccggaggtcgccgccccgagcgacgacgagctcgcagccctcgacgagctc
ggcaccgcgggcacgtgggaggtcttcggccggcgcctcaaggtcaccaacctcgacaag
gagctgttcgcggggcgcgacggcgggccgcccgtcaccaagcgcgagctgctgcggtac
gccgcccggatcgcgccggtcgcgctgccgtacctcgcgggccgcgcgctcaacatgcac
cgcttcccgcagggcgccggcacggccgggttctggcacaagcagctcccggaccacgcg
ccggcgtgggtgccgcgctgggaccgccccgacgtcgacccgggggagtccaccacgtac
ctcgtcgtcgacgagccggcggcgctggtgtgggccgcgaacttcggcgcgctggagtgg
cacgcgtggacgtcgcggacgagcgcgccggacctgccgacgtacgcgctggtcgacctc
gacccgggccccgcgacggcctgggaggacctggtgctgctcgcgggtctgcaccgcgac
gcgttcgagcacgtcggggtgcgggcgtaccccaagctgaccggcaggcgcggcatccag
gtgtgggtgccgatcaccgtcggtccgtcgttcgacgagacgcgcgcgtgggtcgagcgc
ctgtcgcgcaccgtcggcaaggtcgtgcccgacctcgtgagctggcggtgggaggtgcgc
gagcgcggcgggcaggcgcggctggactacacgcagaacgcggtcaacaagacgctcgtc
gcgccgtacagcccccgcgcggccgccggtgcgcccgtctccgcgccgatcacgtgggac
gagctcgacgacccggacctgcgctcggacacgttcaccgtccgcacggtcctcgaccgg
ctcgcggagcgcggtgacccgttccgcggcgtcctggccgccgaccagcacctgccgccg
ctcacctga
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