Chitinibacter fontanus: HZU75_16325
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Entry
HZU75_16325 CDS
T06720
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cfon
Chitinibacter fontanus
Pathway
cfon03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cfon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HZU75_16325 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cfon03400
]
HZU75_16325 (mfd)
Enzymes [BR:
cfon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HZU75_16325 (mfd)
DNA repair and recombination proteins [BR:
cfon03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HZU75_16325 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Glyco_tran_WecG
PagP
Motif
Other DBs
NCBI-ProteinID:
QLI82959
UniProt:
A0A7D5VBG0
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Position
complement(3428331..3431735)
Genome browser
AA seq
1134 aa
AA seq
DB search
MTLPALPPVSNIVQRLQIATPHGSGDARLLAEYVSEVKLLVVITASAQEAVRIKDEMAFF
LPEKNIVQLPDWETLPYDHFSPHSDLISERLAALWQVRQGAAEVLVVPLQTAMGVFAPVE
FLTGTTFFLKKGEKLDAEKLRADMAFAGYNHVTQVYGPGEFSIRGGLIDLFPMGSTLPFR
IDLFDDQIETIRTFDVDTQRSLYPVPEIRLLPAREFPTDDAGKTKFRQRFREVFEGAPTN
ARLYKDVSNGIIPAGIEYYLPLFFDATATLFDYLPSDGVLAMHGDLAGAAEQYWQDIAER
HKLNIGDKDRPLLPPRDLFVAPDLLFGHIKKYRRIELTTGTTSITQPLPSLDVDRRSENP
ISKLTDFVAHYPGRILLVAESLGRRETMAQFFAEYGFKPALVDNWIEAKASKDQIQLIAA
PIFRGFVWQAESLAVITEADLYPAVIQSRGKKQQKRSNTDAMLRDLSELKIGDPVVHEAH
GIGLYMGLTSMDLGDGDTELLLIEYAGGDKLYVPVSQLHVISRYSGGSTENVNVHKLGSG
AWEKAKRKAAEQVRDTAAELLNLYARRAARQGHAFEWSLHDYQAFAAGFGFEETADQAAA
IEAVLVDMRTTQPMDRLVCGDVGFGKTEVALRAAFCAVAGGKQVAVLVPTTLLAEQHYQN
FADRFADWPIKVAELSRFRSGKETAAAIKGLADGTVDIVIGTHKLVQPDVEFAKLGLVII
DEEHRFGVRQKEQLKALRANVDVLTLTATPIPRTLAMSLEGLRDFSVIATAPNKRLAVKT
FVAKFSDGIIREAVLRELKRGGQVFFLHNEVETIENMREKLALLLPEARIGVAHGQMRPT
DLEHVMRDFNQMRFNVLLCTTIIENGIDIPNANTILMNRADKFGLSQLHQMRGRVGRSHH
QAYAYLLVPDVDGISKDAKKRLEAIQMMEELGSGFYLAMHDLEIRGAGEVLGDSQSGEMQ
EIGFALYSQMLKQAVKALKAGKEPDLSQPLGVTTEINLHAPALLPNEYCPDVNERLSLYK
RLASVENNDELNDIHQEMIDRFGLLPDPAKVLLDCHRLRMLAGPLGISKIDAADNTIIIH
FLPKTTVDPMKIISLIQSKKNYKLAGQDKLRIEGNWPESALRAVRVKELINELH
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atgacgcttcctgccctacccccggtctccaatatcgtgcaacgcctgcaaatcgccacg
ccgcatggctcgggtgatgcgcgcctgctggctgaatatgtgagtgaggtgaaattactg
gtggtaatcaccgccagcgcgcaggaagcggtacgcattaaagatgaaatggcgtttttc
ctgccagaaaaaaacatcgtgcagctgcccgactgggaaacgctgccttacgaccatttc
tcgccacactccgatttgatcagcgagcggctcgcggcgctgtggcaagtgcggcaaggt
gcagccgaagtgctggtggtgcccttgcaaacggcgatgggcgtgtttgcgccggttgag
tttttgactggcacgacgtttttcctgaaaaaaggcgaaaagctcgacgctgaaaaactg
cgcgccgatatggcgtttgccggttacaaccacgtcacgcaagtctacgggccgggcgaa
ttttcgattcgcggcggcttaatcgatttattcccgatgggcagcacgctgccgttccgg
attgatctatttgacgatcagatcgaaaccatccgcacttttgatgtcgatacgcagcgc
agcctgtatccggtaccggaaattcgcctactgcccgcgcgcgaatttccgacggatgac
gcaggtaaaaccaaattccgccagcgtttccgtgaagtatttgaaggcgcgccgaccaat
gcgcgcctgtataaagatgtgagcaatggcattatcccagcagggatcgagtactacctg
ccgctcttttttgacgcgacggcaacgctatttgattacctacctagcgacggggtattg
gcgatgcacggtgatctagcgggggctgcagagcaatactggcaggatattgccgaacgc
cacaagctcaatatcggcgataaagatcgcccattgctgccaccgcgtgatttatttgtt
gcgcccgacctactctttggccatatcaaaaaatatcggcgcattgagttgaccacaggt
acgaccagcatcacccagccgctgccatcgctcgatgttgaccgccgcagcgagaaccct
atttccaagctcaccgattttgtcgcacactatccgggccggattttgctcgtcgccgaa
agtctgggccgccgcgagacgatggcacaattcttcgccgaatatggcttcaagcctgca
ctggtcgacaactggattgaggccaaagccagcaaggatcaaatccagctaatcgccgcg
ccgattttccgtggttttgtctggcaggctgaatcgttggccgtgattactgaggccgat
ctgtatccggccgtgattcaatcacgcggcaaaaagcagcaaaaacgcagcaataccgac
gcgatgctgcgcgatctatccgagctcaaaattggcgacccagtggttcacgaggcccac
ggcattggcctgtatatgggcctgacgtcgatggatttgggcgatggcgataccgaattg
ctgctgatcgaatacgcgggcggcgataaattgtatgtgccagtaagccaattgcatgtc
atttcacgctattcgggtggatcaaccgaaaatgtgaatgtccacaagctgggctcaggt
gcttgggaaaaggccaaacgcaaagctgccgaacaggtgcgtgataccgccgctgaattg
ctcaatctttacgcgcgtcgcgcggcgcgccaaggccacgcgtttgaatggagtctgcac
gattaccaagcctttgccgccggttttggctttgaagaaacagccgatcaggccgccgca
attgaagcggtcttggttgatatgcgcaccacgcagccgatggatcgcttggtgtgtggt
gacgtcggctttggtaaaaccgaagtggcactccgcgcggctttctgcgccgtcgcaggc
ggcaaacaggttgcggtactagttccaacgaccttgctggccgagcagcattaccagaat
tttgccgatcgctttgccgattggccgatcaaagttgccgagttgagccgtttccgttcg
ggcaaagaaactgccgccgcgatcaaaggtttggccgatggcactgtagacatcgtgatc
ggcacacataaactcgttcaacctgatgtcgaattcgccaagcttggcctcgtgatcatc
gacgaagagcacaggtttggcgtgcgccagaaagagcaacttaaagcgctgcgcgccaat
gtcgatgtattgaccctcaccgccacgccgattccacgtacgctagcgatgagtctggaa
ggcttacgtgatttctccgtgattgctacagcgccgaataaacgcttagcagtcaaaacc
tttgtcgcgaaatttagcgacggcattattcgcgaagcggtactgcgcgaactcaagcgc
ggcgggcaggtgttcttcttgcacaatgaagtcgaaaccattgaaaacatgcgtgaaaaa
ttagcgctactgttacccgaagcccgcatcggcgtcgcccacggccagatgcgcccgacc
gatctggaacacgtgatgcgcgactttaatcagatgcgctttaatgtgctgctgtgcacg
acgattatcgaaaacggcatcgacatcccgaacgccaataccattttgatgaatcgcgcc
gacaaatttggtctgtcgcaattgcaccaaatgcgcggccgcgttggtcgtagtcatcac
caagcctacgcctacctgctggtgcctgacgttgatggcatttcgaaagacgccaaaaag
cgtcttgaagcgattcagatgatggaagagctgggttcgggcttttatctggcgatgcat
gacttggaaattcgcggagcaggtgaagtactgggcgattcgcaatcgggtgaaatgcag
gaaatcggctttgcgctgtatagccaaatgctcaagcaggcggtcaaagcactcaaagcg
ggcaaagagcctgatctatcgcagccgctgggcgtgacgacggagatcaatctgcatgcg
ccagcgctgctaccgaatgaatattgccccgatgtaaacgaacgcctgagcctctataaa
cgtcttgccagcgtcgagaacaacgacgaactcaacgacattcatcaggaaatgatcgac
cgttttggcctgctgcccgacccggctaaagtactgctcgattgccaccgcctacgcatg
ttggctggtccattgggcattagcaaaattgacgcggccgacaacacgatcattattcat
ttcttgccaaaaacgacggttgatccgatgaagatcatctcgctgattcaaagcaagaaa
aactacaagctcgccggccaagacaagctgcgcattgaaggtaattggcccgagagcgca
ctgcgggctgtgcgcgtcaaagaactgattaacgagctacattaa
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