Corynebacterium fournieri: CFOUR_03770
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Entry
CFOUR_03770 CDS
T09290
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cfou
Corynebacterium fournieri
Pathway
cfou03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cfou00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CFOUR_03770 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cfou03400
]
CFOUR_03770 (mfd)
Enzymes [BR:
cfou01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CFOUR_03770 (mfd)
DNA repair and recombination proteins [BR:
cfou03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CFOUR_03770 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
CbiX
RecG_dom3_C
UB2H
DUF3638
AAA_30
Motif
Other DBs
NCBI-ProteinID:
WJY97182
LinkDB
All DBs
Position
770785..774417
Genome browser
AA seq
1210 aa
AA seq
DB search
MTDTTPAVLGGLLTAALTDPKLKGLVTHVGEDSLHVTGIDQARSWAAGAIAREIPLLLVT
ATGHEAEDLAAELKAILGEEEVAQFPAYETLPHERLSPAADIVGRRSKVLWDMPRVIVAA
ARAVCQPVLPAVEPIRIAVDQECDFEELTQQLVHFAYDHVDMVASRGEFATRGGIIDVFP
TTAQNPVRIEFWGDEVTDIRSFAVADQRTIEEVRSVELHPARQLLIDDSVAAKADELARK
FPSNPTLSSLLSRISEKQPADGMEALIPALTDEQYAVLPELMPAGSLVLVTNPEKVRARI
ADLEATDREFLEAGWEAAAMGAEGPVVVEGLDVSASSYRSYESLEISARKAGNAWWTFAP
PGMFAADDAETLPLEFEPAPAPKGDPKAIEQLYATLKLHVGNNHGKAAYVAPAKGSIDRM
AERLREHGISARVATPGLEPVEGAVTLYQALSHAGLVFSGPNLVVVTETDVTGNRVGDIA
GAKRRAPRRRNRVDPLALQPGDFVVHDTHGIGKFVKMAERTVKAGDEDSRREYIVLEYQP
AKRGQPGDQLWVPMESLDLLSKYTGGEKPSLSKMGGSDWKSTKRKARAAVREIAGELVEL
YAKRQAAPGHAFAPDTPWQHEMEDAFPFMETEDQLTAIEAVKADMEKPTPMDRVIVGDVG
FGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHFSTFNQRMDGFGVTVRELSRFTTAAD
SKKIISGLADGSVDIVIGTHRLLQTGVQWKNLGLIIVDEEQRFGVEHKEHIKALKSHVDV
LTMTATPIPRTLEMSLTGIREMTSITTAPEDRHPVLTYVGPQEDKQVAAAIRRELLRDGQ
VFYIHNKVSDIEKTARQLRELVPEARIVVAHGQMSEQVLEQTVQGFWNRDYDVMVCTTIV
ETGLDIANANTLIVENAQNMGLSQLHQLRGRVGRSRERAYAYFLYPKDKTLTETSYDRLA
TIAQNNDLGSGIAVAQKDLEMRGAGNVLGAEQSGHIAGVGFDMYVRLVSEAVETFKGLMS
GEPVDATDKGPKEIRVDLPVDAHIPETYINSERLRLEVYRKLAEARDDDALRAAADDMID
RFGALPAEVEHLMAVARLRNQAREVGVSDILTQGSRIKLHPVELPDSKQVRLKRLYPGAN
FRAAAKALQVPMPREGGAKRALNAPNLRDTELLQWVADFMTEMLDAPKISVAGAAKTEEK
PKKKVFSVSE
NT seq
3633 nt
NT seq
+upstream
nt +downstream
nt
atgactgataccacccctgcagtgctcggcgggttgctgacggcagcgttgacagacccg
aaactgaagggccttgtcacgcacgtcggcgaggattcgctgcacgtaacgggcattgac
caggctcgttcctgggctgctggcgcgattgcccgggagataccgctgctgttggtcacg
gctacgggccacgaggctgaggatctcgcggctgagctcaaggcgatcttgggcgaggaa
gaggtggcgcagttcccggcgtatgagacgttgccgcacgagcgactctcgccggcggcg
gatatcgtgggccgccgctcgaaggtgctgtgggacatgccgcgcgtgattgtcgcggcg
gcgcgtgcggtgtgccagccggtgctgccggccgtggagccgatccgcatcgcggtggac
caggagtgcgattttgaggagctgactcaacagctggtgcacttcgcgtacgaccatgtg
gacatggtggcctccaggggcgagttcgccacccgcggcggcattatcgacgtgtttccg
accaccgctcaaaaccccgtgcgcatcgagttctggggcgatgaagtcaccgacatccgc
tccttcgccgtcgccgaccagcgcaccatcgaggaggtgcgttcggtggagctgcacccc
gcgaggcagttgcttatcgacgactccgtggccgccaaagccgatgagctggcgcggaaa
ttcccctcgaaccccacgctttcctcactgctttcccgcatctccgaaaagcagccggcg
gacggcatggaggcgctgatcccggcgttgacggacgagcagtacgcggtgctgccagag
ctcatgcccgccggttctctggtgctggtgaccaacccggagaaggtccgcgcccgcatc
gccgatttggaggcgacggaccgcgagttcctcgaagcgggctgggaggccgccgccatg
ggcgccgaaggccccgtggtggtggagggtctggacgtctccgcgtcgtcctaccgctcg
tacgaatccctggagatctctgcgcgcaaggcgggcaacgcctggtggacgttcgccccg
ccgggcatgttcgccgcggacgacgcggaaacgctgccgctggaattcgagcccgccccc
gcgccgaaaggcgacccgaaggcgattgagcagctttacgccaccttgaagctgcacgtc
gggaacaaccacggcaaggcggcgtatgtcgcgccggcgaagggctcgatcgaccgcatg
gcggagcgcctgcgcgagcacgggatttccgcccgggtagccacgccgggcctggagcct
gtggagggcgctgtaaccctctaccaggccctgtcccatgccggcctggtgttttccggg
ccaaaccttgtggtggtcaccgaaacggatgtcaccggcaaccgcgtcggcgacatcgca
ggcgctaaacggcgggccccgcgccgccgcaaccgcgttgatccgctggccctgcagccg
ggcgatttcgtggtgcacgacacccacggcatcggcaagttcgtgaagatggcggagcgc
accgtcaaagccggcgacgaggattctcgccgcgaatacatcgtgttggagtaccagccc
gccaagcgcggccagcccggcgaccagctgtgggtgcccatggagtcgttggacctgctg
agtaagtacaccgggggcgagaagccgtcgcttagcaaaatgggcggctccgactggaaa
tccaccaagcgcaaggcgcgcgcggcggtgcgcgagatcgccggcgagctggtggagctc
tacgccaagcgccaagccgcgccggggcacgcgttcgcgccggacacgccgtggcagcac
gagatggaagacgccttcccgtttatggagaccgaagaccagctcaccgccatcgaggcc
gtgaaggcggacatggaaaagcccaccccgatggaccgcgtgatcgtcggcgacgtcggc
ttcggcaaaaccgaggtggctgtacgtgccgcgttcaaggcggtgcaggacggcaagcag
gtcgcggtgctggtaccgaccacgcttttggcgcagcagcacttctccacgttcaaccag
cgcatggacggcttcggcgtgacggtgcgggagctgtcgcgctttactaccgccgcggat
tcgaagaagatcatctcggggcttgcggatggctcggtggacatcgtcatcggtacccac
cgcctgctgcagacgggcgtgcagtggaagaacctcggtttgatcatcgtggacgaggag
caacgcttcggcgtggagcacaaggaacacatcaaggccttgaagtcgcatgtggacgtg
ctgaccatgaccgcaacgccgatcccgcgcaccctggagatgtcgctgaccggcatccgc
gagatgacctccattaccaccgcgcccgaggaccgccacccggtgctgacctatgtggga
ccgcaggaagacaagcaggtcgccgcagcgatccggcgcgagctgctgcgcgacggccag
gtcttctacatccacaacaaggtctccgacattgaaaagaccgcccgccagctgcgcgag
ctggtcccggaggcgcgcatcgtggtcgcgcacggccagatgagcgagcaggtgctcgag
cagaccgtgcaaggattctggaaccgtgattatgacgtcatggtctgcaccacgattgtg
gaaaccggcctggacatcgccaacgccaacaccctgatcgtggaaaacgcccagaacatg
ggcctcagccagctgcaccagctgcgcgggcgcgtggggcgctcccgcgagcgcgcatac
gcgtactttttgtacccgaaggacaagacgctcacggagacctcctacgaccggcttgcc
accatcgcccagaacaacgacttgggctccggcatcgcagtggcgcaaaaggacttggag
atgcgcggcgccggtaacgtgttgggggcggagcaatccggccacatcgctggcgtgggc
tttgacatgtacgtgcgcctggtcagcgaggcggtggagacgttcaaggggctgatgagc
ggcgagccggtcgacgcgacagacaaaggcccgaaggaaatccgcgtggacctgccggtg
gacgcccacatcccggagacctacatcaactccgaacgcctgcgcttggaggtctaccgc
aagctcgcggaggcgcgtgacgacgacgcgctgcgtgccgccgccgacgacatgatcgac
cgcttcggtgccctgcccgcggaggtcgagcacctcatggctgtggcgcggctgcgcaac
caggcccgcgaggtgggggtttccgacatcctcacccagggcagccgcatcaagctgcac
ccggtggagctgccggactccaagcaggtgcgcctgaagcgcctgtacccgggcgcgaac
ttccgcgccgcggccaaggcgctgcaggtgccgatgccgcgcgaaggtggagcgaagcgc
gccctgaacgcgccgaacttgcgcgatacggagctgctgcagtgggtggccgacttcatg
acggagatgctggacgcgccgaagatctcggtcgccggggccgccaagacggaggagaag
ccgaagaagaaggtgttctccgtcagcgagtag
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