Camelus ferus (Wild Bactrian camel): 102519149
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Entry
102519149 CDS
T02979
Symbol
LIG1
Name
(RefSeq) LOW QUALITY PROTEIN: DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
cfr
Camelus ferus (Wild Bactrian camel)
Pathway
cfr03030
DNA replication
cfr03410
Base excision repair
cfr03420
Nucleotide excision repair
cfr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
102519149 (LIG1)
03410 Base excision repair
102519149 (LIG1)
03420 Nucleotide excision repair
102519149 (LIG1)
03430 Mismatch repair
102519149 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cfr03032
]
102519149 (LIG1)
03400 DNA repair and recombination proteins [BR:
cfr03400
]
102519149 (LIG1)
Enzymes [BR:
cfr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
102519149 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
102519149 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
102519149 (LIG1)
DNA replication proteins [BR:
cfr03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
102519149 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
102519149 (LIG1)
DNA repair and recombination proteins [BR:
cfr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
102519149 (LIG1)
NER (nucleotide excision repair)
Other NER factors
102519149 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
102519149 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
DDR
PucR
Motif
Other DBs
NCBI-GeneID:
102519149
NCBI-ProteinID:
XP_032341553
UniProt:
A0A8B8TID7
LinkDB
All DBs
Position
9:13985499..14023709
Genome browser
AA seq
915 aa
AA seq
DB search
MQRSIMSFFQPKKEGKVKKPEETSNSTRETESPPKAALKERNRMVPEGDSPVKRPGRKVA
RVLGSEGEEEEEAPSPLKGQKPAPDSPQNSPPHPVTLPKSPSLSNTSPAVLSPPAIPKRR
TARKQVPKRTFLEVLEEQSKDRVTEAKKKKEDKELETPSESLTEPEVGKKEEADAKEQPT
MPPRPRETPEAEPLTESVCKPEMATKQGPQEDGQTQPPRPAAKTLSSFFSPRKPAVKKEA
EEEGPGSVRKEAAKGHLDPPSYNPAKNNYHPIEDACWQPGQKVPYLAVARTFEKIEEVSA
RLRMVETLSNLLRSVVALSPPDLLPVLYLSLNRLGPPQQGLELGIGDGILLKAVAQATGR
QLESVRAEATEKGDVGLVAESSRSMQRLMLPPPALTAAGVFAKFRDIAQLAGNASTTKKM
DIIKGLFVACRHSEARFIARALSGRLRLGLAEQSVLAALAQAMSLTPPGQEFPPAVVDAG
KGKTAEARKTWLEEQGMILKQTFCEVPDLDRIVPVLLAHGLEQLPEHCRLSPGIPLKPML
AHPTRGVGEVLKRFEEAAFTCEYKYDGQRAQIHLLEGGEVRIFSRNQEDNTGRYPDVISR
VPKIKLPSVTSFILDTEAVAWDQEKKQIQPFQVLTTRKRKEVDAAEIQVQVCLYAFDLIY
LNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDTEQIAEFLEQSVKDSCEGLMV
KTLDTDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLASYD
EESEELQAICKLGTGFSDEELEEHHQSLQALVLPAPRPYVRADGAVTPDHWLDPSAVWEV
KCADLSLSPIYPAARGLVDSEKGISLRFPRFLRVREDKKPEQATTSAQVACLYRKQSQIQ
NQHGAEPDSEPEDFY
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagtatcatgtcatttttccagcccaagaaagaaggcaaagtgaagaagcca
gaggagacatccaacagcaccagagaaacagagtcccctccaaaggcggctctgaaagag
cggaatagaatggtgcctgagggcgactctccagtgaagaggccggggaggaaggtggcc
cgggtcctgggcagcgagggggaggaggaggaggaagccccctcgcccctcaaaggccag
aagcctgcaccagactctccacagaactcccctccccatcctgtcacacttcccaagagc
ccttccctctccaacacctctccagcagtcctctccccgccggcgatcccaaagcgtcgc
acagcccggaagcaggttcctaaacggacatttctggaagtcctggaagagcagagcaag
gacagggtcacagaagccaagaagaagaaggaggacaaagaactagagaccccatcagaa
agcctcacggagcctgaagtgggcaaaaaggaggaggcagatgcgaaggagcagcccacg
atgccccccagaccccgagagacccccgaagccgagcccctgacagaaagtgtttgcaag
cctgagatggcaacgaagcagggaccacaggaggacggccagacacagcctccccgccca
gctgccaagacactcagcagtttcttctccccccgaaagccggcagtcaaaaaggaagct
gaagaagagggacctggctctgtaagaaaggaggcagccaagggacacctggacccaccc
agctacaacccggccaagaacaactaccatcccattgaagatgcctgctggcagccaggc
cagaaggtcccttacctggccgtggcccggacctttgagaagatcgaggaggtttctgct
cggctccgcatggtggagacactgagcaacttgctgcgctccgtggtggccctgtcacct
ccagacctcctccccgtcctctacctcagcctcaaccgcctggggccgccccagcagggc
ctggagctgggcattggtgacggtatccttctcaaggcagtggctcaggccacaggtcgg
cagctggagtcggtccgggccgaggccacagagaagggcgacgtggggctggtggccgag
agcagccgcagcatgcagagactcatgctgcccccgcctgccctgaccgccgccggtgtc
ttcgccaagttccgggacatcgcccagctggccggcaatgcatccacaaccaagaagatg
gacatcatcaaaggcctctttgttgcctgccgccactcagaagctcggttcatcgccaga
gccctgagtggacgcctgcgcctcggactggcagagcagtcagtgctggccgccctcgcc
caggccatgagcctcacgccccctggccaagaattccccccggccgtggtggatgctggg
aagggcaagacagcagaggccagaaagacgtggctggaggagcaaggcatgatcctgaaa
cagacgttctgcgaggtgccagatctggaccggatcgtccctgtgctgctggcacatggc
ctggagcagctgccggagcactgcaggctgagcccagggatccccctgaaaccaatgttg
gcccaccccacccggggcgtcggcgaggtcctgaaacgcttcgaggaggcagctttcacc
tgcgagtacaaatacgatggacagagggctcagatccaccttctggaaggtggggaggtg
aggatcttcagcaggaatcaggaggacaacacgggaaggtaccccgacgtcatcagccgc
gtcccaaagattaaactcccatcagtcacatccttcattctggacactgaagccgtggct
tgggaccaggaaaagaagcagatccagccattccaagtgctcaccacccgcaaacgcaag
gaggtggacgcagcggagatccaggtgcaggtgtgtttgtacgccttcgacctcatctac
ctcaatggagagtccctggtacgtgagcccctctcccgacgccgccagctgctccgggag
aacttcgtggagacggagggcgagtttgtcttcgccacctccctggacaccaaggacacg
gagcagatcgctgagttcctggagcagtcagtgaaagactcatgcgaggggctgatggtg
aagaccctggacaccgatgccacctacgagatcgccaagagatcgcacaactggctcaag
ctgaagaaggactaccttgacggcgtgggcgacaccctggacctcgtggtgatcggcgcc
tacctgggccgggggaagcgggccggccggtacgggggcttcttgctggcctcctacgac
gaggagagcgaggagctgcaggccatatgcaagctggggactggcttcagtgacgaagag
ctggaagagcatcaccagagcctccaggccctggtgctgcccgccccacgcccctacgtc
cgggcagacggcgccgtgacccccgaccactggctggaccccagcgccgtgtgggaggtc
aagtgcgccgacctctccctctcccccatctaccccgctgcccggggcctggtggacagc
gagaagggcatctccctgcgcttcccgcggtttctgcgcgtccgggaggacaagaagccg
gagcaggccaccaccagtgcgcaggtggcctgtctgtacaggaagcaaagtcagattcag
aaccagcacggcgcagagccggactccgagccggaggatttctactag
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