Campylobacter fetus subsp. fetus 04/554: CFF04554_0745
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Entry
CFF04554_0745 CDS
T03330
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cft
Campylobacter fetus subsp. fetus 04/554
Pathway
cft03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cft00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CFF04554_0745 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cft03400
]
CFF04554_0745 (mfd)
Enzymes [BR:
cft01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CFF04554_0745 (mfd)
DNA repair and recombination proteins [BR:
cft03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CFF04554_0745 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
UvrB_inter
SNF2-rel_dom
ATPase_2
Motif
Other DBs
NCBI-ProteinID:
AIR78659
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Position
747850..750822
Genome browser
AA seq
990 aa
AA seq
DB search
MLRLVVQARIYEFFKFNKNIYDILVTNDDKEAREAYDSASYAGLTCFVLPDFRAIQGDDL
RAFNAELLEISKVLTEFYKSDSKNKLLISPIRTLLNKLPTSSNLKTKTISYADTLNLTEF
KEEMLGFGYNFVDIVEGRGEIRISGEIIDIFSVSEDKPIRILLDIDTVCSIRYFDLDTQK
SDKNELTSVIITPFLASLNSDELKDVNDKLENIDSNALIKDINSFGFWVIDGFSDYFESF
KTVLAMQIDIDDIVSNRDLSFLKAVPILPEPKIYKDLEVSVNSDLIKFHGSKKIQILSSN
ESSFNALNLENSSNVELVISNLILNIASKDELILSLNKRVKKQRVKKASLVIDELKTGDF
VVHSDYGIGKFLGLELITVLGSKKEFVVIAYQNNDKLLLPVEHLNMIDRYIAGSGAVVSV
DRLGKASFAKIKEKVREKLFVIANKIIALAAKRELIEGIRLNADSQYAKFKSSAGFIYTD
DQEKAVNDIQNHLKSGRVMDMLLSGDVGFGKTEVAMNAIFLCVKSGYQALFFVPTTLLSS
QHFKSLKERFDKFNIDVRRLDRFTSTKEKSNIIKNLNDAKPMVVIGTHSLLSLKAANLGL
IIIDEEHKFGVKQKEKLKEISEHSHILSMSATPIPRSLNMALSKVKSYSTLLTPPLDRMD
VRTFVKEWDEKLIKEVILREIRRGGQIFYVHNLISDMPSMERELKALIPNLKVLTLHSKI
DAKTTEDEMMKFANKEYDLLLCTSIIESGIHLPNANTIIIDDANKFGIADLHQLRGRVGR
SNKQGYCYFLVGDKNELSSEAVKRLIALESNSFLGSGALLAYHDLEIRGGGNLLGEAQSG
HIEAIGYTLYLKMLEDEINLLLNHQTKEMTQIDIKLSINAFLNTDLINEDRIRLELYRRL
SKCQNVSEVYELGAEIEDRFGKLDAYTKQFLDIIVIKILACEQGFKSVSNYEQNISLTKI
DDTKVILKSRSKDDDDVLAQTLAYLRKNSS
NT seq
2973 nt
NT seq
+upstream
nt +downstream
nt
atgctgaggctagtagtgcaagcaaggatttatgagttttttaaatttaataaaaatata
tacgatatcttagtaacaaatgacgataaagaggcaagagaagcttatgatagtgcttct
tacgccggactcacttgttttgttttaccggattttagagctatacaaggtgatgattta
agagcttttaatgcagaacttttagaaataagtaaagttctaactgaattttataaaagt
gattcaaaaaataagctgcttatatctcctattcgtacgcttttaaataaacttccaact
agctcaaatttaaaaaccaaaactataagttacgcagatacgttaaatctaactgagttt
aaagaagaaatgctcggtttcggatataatttcgtagatatcgtagaaggcagaggtgaa
ataagaataagcggcgaaattatcgatatatttagcgtctcagaagataagccaattaga
attttgctagatatagatactgtttgtagtataagatactttgatcttgatactcaaaaa
tcagacaaaaacgagcttacttcagttattataactccgtttttggcttcattaaatagt
gatgaattaaaagatgtaaatgataaattagaaaatatcgattcaaatgctttgataaaa
gatatcaactcatttggtttttgggttatagacggatttagcgattattttgagagtttt
aaaactgttttggcaatgcaaatagacatagatgatatcgtttctaatagagatctaagt
tttttaaaagctgttcctattttaccagaaccaaaaatttataaagatttagaagttagt
gtaaatagtgatcttatcaaatttcacggcagtaaaaaaattcaaattttgagctcaaac
gagagtagttttaatgctttaaatttagaaaatagttcaaacgtagagcttgtcataagc
aatctgatattaaatatagctagtaaagacgaattgatactatctttaaataaaagagtc
aaaaaacaaagagttaaaaaagcaagtttagttatagatgaattgaaaaccggtgatttt
gtcgtacatagtgattatggtataggtaaatttttaggacttgagcttatcacggtttta
ggtagtaaaaaagagtttgtagttatcgcttatcaaaataacgataaacttcttttgccg
gttgaacatctaaatatgatagatcgttatatagcaggaagcggcgccgtagttagcgta
gataggctcggcaaggctagtttcgcgaaaatcaaagaaaaagttagagaaaagctattt
gttatagctaataaaatcatagctctagctgcaaaaagagagttgatagaaggtataaga
ttaaacgcggatagtcagtatgctaagtttaaatccagcgccggatttatatacacggat
gaccaagaaaaagcagtaaatgatatacaaaatcatctaaagagcggacgagttatggat
atgcttttaagcggcgatgtaggttttggtaaaaccgaagttgctatgaacgccatattt
ttatgcgtaaaaagcggctatcaggctctattttttgtaccaactactttgcttagctct
cagcatttcaaaagtttaaaagagcgttttgataaatttaacatagatgtacgcagacta
gatagatttactagcacaaaagaaaaatcaaatattataaaaaatttaaatgatgcaaaa
ccgatggttgtcatcggcactcattctcttttatctttaaaagcggcgaatttgggactt
ataattatagacgaagagcataaattcggtgttaaacaaaaagaaaaactaaaagagata
agcgaacactctcatatactttctatgtcggctactcctattccaagaagtttaaatatg
gctttaagtaaagttaaaagttatagcactcttttaacgccgccgcttgatagaatggat
gtaagaacatttgtcaaggagtgggatgagaagcttataaaagaggttatattaagagag
attagaagaggaggtcagatattttacgtgcataatttaatatctgatatgccaagtatg
gagcgagaattaaaagctttgataccgaatttaaaagttttaacgcttcatagtaagata
gacgcaaaaactaccgaagatgagatgatgaaatttgcaaataaagagtatgatctgctt
ctttgcacaagtatcatagagagcggtattcatttgccaaatgctaatactattataatc
gatgacgcaaataaatttgggattgcggatttgcatcagttaagaggaagagtcggtagg
agcaataaacaaggctattgctactttttggtcggcgataaaaatgagcttagtagtgaa
gccgtaaaaaggcttattgctcttgaaagtaattcgtttttgggctccggagcacttctt
gcttatcatgatttagaaattagaggtggcgggaatttgcttggagaggctcaaagcggt
catatagaagctatcggatatacgctttatctaaaaatgcttgaagatgagataaacttg
cttttaaatcatcaaacaaaagagatgactcaaatagatataaaacttagcataaatgca
tttttaaatactgatctcataaatgaagatagaatcaggcttgaactatacagacgtctt
agcaaatgccaaaatgtaagtgaagtttatgagctaggagcagaaattgaagatagattt
ggcaaacttgatgcttacactaagcaatttttagatattatagtcataaagattttggcc
tgcgaacaagggtttaaatctgtgagtaattatgaacaaaatataagcttaactaaaatt
gacgatacgaaggttattttaaagtcaaggagtaaagatgatgatgacgtacttgcacaa
actctggcatatttaagaaagaattcatcatga
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