Collimonas fungivorans: CFU_3156
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Entry
CFU_3156 CDS
T01583
Symbol
xylR
Name
(GenBank) Xylose activator XylR (AraC family)
KO
K02529
LacI family transcriptional regulator, galactose operon repressor
Organism
cfu
Collimonas fungivorans
Brite
KEGG Orthology (KO) [BR:
cfu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cfu03000
]
CFU_3156 (xylR)
Transcription factors [BR:
cfu03000
]
Prokaryotic type
Helix-turn-helix
LacI family
CFU_3156 (xylR)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peripla_BP_3
HTH_18
HTH_AraC
Peripla_BP_4
Peripla_BP_1
HTH_23
TetR_N
HTH_31
ADD_DNMT3
Motif
Other DBs
NCBI-ProteinID:
AEK62981
UniProt:
G0AA47
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Position
3702808..3704034
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AA seq
408 aa
AA seq
DB search
MTLLGDCRMTRTVHRIALLFNGNKIFDRDIIAGIGEYLSSTRASWDLFLEEDFRCRLQGI
ERWQGHGIIADFDDPEACAALSRVSLPVVAVGGSYADAADYPGDTPYVATDNFKLVKLAY
DHLIEAGLQRFACFSLPQADVNRWAQEREKAFESLMQRDGMQGEIYRGLGTSAPSWDTAV
EQQIAWLQTLPKPIGIIAVTDARARQLLQACLCAGIAVPEQVALIGIDNDPLARILTRVP
LSSVIQGTREMGRTAAHLLHQMLHGGRLAGTRILVPPAGINVLASSRHEAPSHPHVMQAM
HFIRQYACQGIKTEQVADYVGVSRSSLEWYFRRELGRSVHDEILRFKLDVAKDMLQHKDQ
RSIAEIAVSCGFTSVQYMHAVFKRELGCTPREYQDRLPQAEAGPLSLN
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
gtgacgctcctaggagactgcaggatgacaagaaccgtgcaccgtatcgcactgctattc
aacggcaacaagatcttcgaccgcgacatcatcgccggcatcggcgagtacctgagcagc
acacgcgcctcctgggacttgttcctggaagaggatttccgctgccgcctgcaaggcatt
gagcgctggcagggccacggcatcattgccgacttcgacgacccggaagcctgcgcagcc
ttgtcgcgggtcagcctgccggtggtggcggtgggcggatcgtatgccgacgcagccgac
tatccgggcgacacgccgtatgtcgccaccgacaatttcaagctggtcaagctggcctac
gatcacctgatcgaagccggcctgcagcgctttgcctgtttcagcctgccgcaggccgat
gtgaaccgctgggcccaggaacgcgagaaggcatttgaaagcctgatgcagcgcgacggc
atgcaaggtgaaatctaccgcggcctcggcaccagcgcgccttcctgggatactgcggtg
gagcagcagatcgcctggctgcagacgctgcccaagccgatcggcatcatcgccgtcacc
gacgcccgcgcgcgccagctgctgcaggcttgcctgtgcgccggcatcgcggtgccggaa
caagtagcgctgatcggcatcgacaacgatccgctggcgcgcatcctgacccgggtaccg
ctcagttcggtgatccagggcacgcgcgaaatgggccgcaccgccgcccacttgctgcat
cagatgctgcacggcggacgcctggccggcacccgcatcctggtgccgccggccggcatc
aacgtgctggcgtcgagccgccacgaagcgcccagccatccgcatgtgatgcaggccatg
cacttcatccgccagtacgcttgccagggcatcaagaccgaacaggtggccgattatgtc
ggcgtctcgcgctcttcgctggagtggtatttccgccgcgagctggggcgcagcgtgcat
gacgagatcctgcgcttcaagctggatgtggcgaaggacatgctgcagcacaaggatcag
cgtagcattgccgagattgccgtcagctgcggctttacatcggtgcagtacatgcacgcg
gtgttcaagcgcgagctcggctgtaccccgcgcgagtatcaggatcggctgccgcaggca
gaggccggcccgctgtcgcttaattaa
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