Cystobacter fuscus: CYFUS_001959
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Entry
CYFUS_001959 CDS
T05065
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cfus
Cystobacter fuscus
Brite
KEGG Orthology (KO) [BR:
cfus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CYFUS_001959
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cfus03400
]
CYFUS_001959
Enzymes [BR:
cfus01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CYFUS_001959
DNA repair and recombination proteins [BR:
cfus03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CYFUS_001959
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
mRNA_cap_enzyme
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ATB36544
UniProt:
A0A250IXT1
LinkDB
All DBs
Position
2380011..2382608
Genome browser
AA seq
865 aa
AA seq
DB search
MGTYGEKRDFSLTSEPGPDVEASPSGAAPLFVVHKHDATRLHYDLRLEIDGVLVSWAIPK
GPSYDPAEKRLAVQTEDHPLAYATFEGRIPDGAYGAGDSLLWESGTFDTVPPGQASEQLA
KGRLHVVLHGAKLMGEWHLIRTRPMGKKAQWLCFKAKDGTERPGYDVTEAHPESVKSGQR
VTRGPVRRTQRISEARPVRVSRPTRAKKAPALSPEALLEKVGAPMLATLAQVESTDQGEW
LYEVKYDGFRALAAFREGEVALHSRGGKDLSARFPDIARALGALGGHEAVVDGEIVALDD
RGRSRFQLLGKGVEERYVIFDVPWLDGEDLRPLPLEERRERLERLLARVKAPLQLAERVE
GSARQALALARRRGWEGVMAKRVGTPYSPGRGETWLKLKVQANQEVAIVGFTPMANERPE
LGSLLVGVREGKAWRYAGKVGTGYTTKVRRELRELLSRDEVKKPPVQEAPRVRDALHHEE
AIWVKPRHVAQVAFTEWTEDGRLRHPSFQGLRSDKRPEECVRERPIERPARRGPHRQTGR
KSRPGARSAGRSAISRKEAAAAKKEAAAAKKEAAAAKKGASAALVGLTHGDRVLFPEPGY
TKADVYRYFQDVAPFMVPALAGRPLTLQQWPQGVKAPGFFRQGVEHVPEGLSTVRITHET
RELSHVVVDRPESLLWLANQSALTLHMWSSRVPHLEQPDWVVFDLDPGPGGTFGDLIELA
TGLRRYLERLELVSVPKTSGKRGLHVLVPLSPGHTYEQARAFAHETFAALSEEYPELATI
ERSKSRRQGRLYLDADQNAWGKTVVAPYSPRALPHAPVSTPLAWSEVTRRLEPSRFTLGT
LRKRLDKVGDLFSPALKGRQSLPNR
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
ttgggaacctatggcgagaagcgtgacttctccctcacctcggagcccggccccgatgtc
gaggcctcgccctcgggggcagcccctctcttcgtggtgcacaagcacgacgccacgcgg
ctgcactatgacctgcggctggagatcgacggggtgctggtgagctgggccattcccaag
ggccccagctacgatccggccgagaagcggctcgcggtgcagaccgaggaccaccccctg
gcctatgccaccttcgagggccgcatccccgatggggcctatggggcgggagactcgctg
ctgtgggagtcgggcaccttcgacacggtgcctcccgggcaggcctccgagcagctcgcg
aaggggcggctgcacgtggtgctgcacggcgcgaagctgatgggcgagtggcacctcatc
cgcacgcgtcccatgggcaagaaggcgcagtggttgtgcttcaaggccaaggatggcacc
gagcgccccggttatgacgtcaccgaggcccaccccgaatccgtgaagtccggccagcgc
gtcacccgcggccccgtgcggcgcacccagcgcatctccgaggccagacccgtgcgcgtc
tcccgccccacccgcgcgaagaaggctccggccctctctcccgaggcgctgctggagaag
gtgggcgcgcccatgctcgccacgctcgcccaggtggagtccaccgatcagggcgagtgg
ctctacgaggtgaagtacgacgggttccgcgcgctcgccgcgtttcgcgagggcgaggtc
gcgctgcactcgcgcggcggcaaggatctgtcggcgcgcttccccgacatcgcccgggcg
ctcggggcgctcggtgggcacgaggcggtggtggacggggagatcgtcgccctggacgac
agggggcgctcccgcttccagctcctcggcaagggggtcgaggaacgctacgtcatcttc
gatgtgccgtggctcgatggggaggacttgcggccgctgcccctggaggagcgtcgcgag
cggctcgagcggctgctggcgcgcgtgaaggcgcccctgcaactcgccgagcgggtggag
ggcagcgcgcggcaggcgctggccctggcgcggcggcgcggctgggaaggcgtcatggcc
aagcgcgtgggcaccccctattcaccgggccgcggcgagacctggctcaagctcaaggtc
caggccaaccaggaggtggccatcgtgggcttcacgcccatggccaacgagcggcccgag
ctgggctcgctcctggtgggagtgcgagaggggaaggcctggcgctacgcgggcaaggtg
gggaccgggtacacgacgaaggtgcggcgggagttgcgcgagctgctgtcacgcgacgag
gtgaagaagccccccgtccaggaggctccgcgtgttcgtgacgcgctgcaccacgaggag
gccatctgggtgaagccccgccatgtggcgcaggtggcgttcaccgaatggaccgaggat
gggcggctgcgccatccctccttccagggactgcggagcgacaagcgccccgaggagtgt
gtccgggagcggcccatcgagcggcccgcccgccggggtccccaccgtcagacggggcgc
aagtcccgcccgggggcgcgctccgcgggcagatccgccatctcccggaaggaggccgcc
gcggcgaagaaggaggccgccgcggcgaagaaggaggcggctgcggcgaagaagggggcg
agcgcggccctggtggggctcacccacggggatcgggtgctcttccccgagccgggctac
accaaggcggacgtgtaccgctacttccaggacgtcgcgcccttcatggtcccggcgctg
gcgggccggcccctcacgctgcagcagtggccccagggggtgaaggcgccgggcttcttc
cgccagggcgtggagcacgtgccggaggggctctccacggtgcgcatcacccacgagacg
cgcgagctgtcccacgtggtggtggatcggcccgagtccctcctgtggctcgccaaccag
tccgcgctcaccctgcacatgtggtccagccgggtgccgcacctggagcagcccgactgg
gtggtgttcgacctggatccgggccccggggggaccttcggggatttgatcgaactggcc
accgggttgcggcgctacctggagcggctggagctggtcagcgtgccgaagacttccggc
aagcggggcctgcacgtgctggtgcccctgtctccgggccacacctacgagcaggcgcgc
gcgttcgcccacgagaccttcgcggcgctctcggaggagtacccggagctggcgaccatc
gagcgctccaagtcgcggcgccaggggcggctgtacctggacgcggaccagaacgcctgg
ggcaagacggtggtggcgccctactctccgcgtgcgttgccgcacgcacccgtgtccaca
cccctcgcgtggtcggaggtgacgcgccggttggagccctcgcgcttcacgctgggcacc
ctgcgcaagcgcctggataaggtgggagatctgttctccccggccttgaaggggcgtcaa
tctctgcccaatcgctga
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