Campylobacter fetus subsp. venerealis cfvi03/293: CFVI03293_0704
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Entry
CFVI03293_0704 CDS
T03000
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cfv
Campylobacter fetus subsp. venerealis cfvi03/293
Pathway
cfv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cfv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CFVI03293_0704 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cfv03400
]
CFVI03293_0704 (mfd)
Enzymes [BR:
cfv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CFVI03293_0704 (mfd)
DNA repair and recombination proteins [BR:
cfv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CFVI03293_0704 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CarD_TRCF_RID
TRCF
ResIII
UvrB_inter
SNF2-rel_dom
ATPase_2
Motif
Other DBs
NCBI-ProteinID:
AHE94024
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All DBs
Position
722111..725068
Genome browser
AA seq
985 aa
AA seq
DB search
MQARIYEFFKFNKNIYDILVTNDDKEAREAYDSASYAGLTCFVLPDFRAIQGDDLRAFNA
ELLEISKVLTEFYKSDSKNKLLISPIRTLLNKLPTSSNLKTKTISYADTLNLTEFKEEML
GFGYNFVDIVEGRGEIRISGEIIDIFSVSEDKPIRILLDIDTVCSIRYFDLDTQKSDKNE
LTSVIITPFLASLNSDELKDVNDKLENIDSNALIKDINSFGFWVIDGFSDYFESFKTVLA
MQIDIDDIVSNRDLSFLKAAPILPEPKIYKDLEVSVNSDLIKFHGSKKIQILSSNESSFN
ALNLENSSNVELVISNLILNIASKDELILSLNKRVKKQRVKKASLVIDELKIGDFVVHSD
YGIGKFLGLELITVLGSKKEFVVIAYQNNDKLLLPVEHLNMIDRYIAGSGAVVSVDRLGK
ASFAKIKEKVREKLFVIANKIIALAAKRELIEGIRLNADSQYAKFKSSAGFIYTDDQEKA
VNDIQNHLKSGRVMDMLLSGDVGFGKTEVAMNAIFLCVKSGYQALFFVPTTLLSSQHFKS
LKERFDKFNIDVRRLDRFTSTKEKSNIIKNLNDAKPMVVIGTHSLLSLKAANLGLIIIDE
EHKFGVKQKEKLKEISEHSHILSMSATPIPRSLNMALSKVKSYSTLLTPPLDRMDVRTFV
KEWDEKLIKEVILREIRRGGQIFYVHNLISDMPSMERELKALIPNLKVLTLHSKIDAKTT
EDEMMKFANKEYDLLLCTSIIESGIHLPNANTIIIDDANKFGIADLHQLRGRVGRSNKQG
YCYFLVGDKNELSSEAVKRLIALESNSFLGSGALLAYHDLEIRGGGNLLGEAQSGHIEAI
GYTLYLKMLEDEINLLLNHQTKEMTQIDIKLSVNAFLNTDLINEDRIRLELYRRLSKCQN
VSEVYELGAEIEDRFGKLDAYTKQFLDIIVIKILACEQGFKSVSNYEQNISLTKIDDTKV
ILKSRSKDDDDVLAQTLAYLRKNSS
NT seq
2958 nt
NT seq
+upstream
nt +downstream
nt
gtgcaagcaaggatttatgagttttttaaatttaataaaaatatatacgatatcttagta
acaaatgacgataaagaggcaagagaagcttatgatagtgcttcttacgccggactcact
tgttttgttttaccggattttagagctatacaaggtgatgatttaagagcttttaatgca
gaacttttagaaataagtaaagttctaactgaattttataaaagtgattcaaaaaataag
ctgcttatatctcctattcgtacgcttttaaataaacttccaactagctcaaatttaaaa
accaaaactataagttacgcagatacgttaaatctaactgagtttaaagaagaaatgctc
ggtttcggatataatttcgtagatatcgtagaaggcagaggcgaaataagaataagcggc
gaaattatcgatatatttagcgtctcagaagataagccaattagaattttgctggatata
gatactgtttgtagtataagatactttgatcttgatactcaaaaatcagacaaaaacgag
cttacttcagttattataactccgtttttggcttcattaaatagtgatgaattaaaagat
gtaaatgataaattagaaaatatcgattcaaatgctttgataaaagatatcaactcattt
ggtttttgggttatagacggatttagcgattattttgagagttttaaaactgttttggca
atgcaaatagacatagatgatatcgtttctaatagagatctaagttttttaaaagctgct
cctattttaccagaaccaaaaatttataaagatttagaagttagtgtaaatagtgatctt
atcaaatttcacggcagtaaaaaaattcaaattttgagctcaaacgagagtagttttaat
gctttaaatttagaaaatagttcaaacgtagagcttgtcataagcaatctgatattaaat
atagctagtaaagacgaattgatactatctttaaataaaagagtcaaaaaacaaagagtt
aaaaaagcaagtttagttatagatgaattgaaaatcggtgattttgtcgtacatagtgat
tatggtataggtaaatttttaggacttgagcttatcacggttttaggtagtaaaaaagag
tttgtagttatcgcttatcaaaataacgataaacttcttttgccggttgaacatctaaat
atgatagatcgttatatagcaggaagcggcgccgtagttagcgtagataggctcggcaag
gctagtttcgcgaaaatcaaagaaaaagttagagaaaagctatttgttatagctaataaa
atcatagctctagctgcaaaaagagagttgatagaaggtataagattaaacgcggatagt
cagtatgctaagtttaaatccagcgccggatttatatacacggatgaccaagaaaaagca
gtaaatgatatacaaaatcatctaaagagcggacgagttatggatatgcttttaagcggc
gatgtaggttttggtaaaaccgaagttgctatgaacgccatatttttatgcgtaaaaagc
ggctatcaggctctattttttgtaccaactactttgcttagctctcagcatttcaaaagt
ttaaaagagcgttttgataaatttaacatagatgtacgcagactagatagatttactagc
acaaaagaaaaatcaaatattataaaaaatttaaatgatgcaaaaccgatggttgtcatc
ggcactcattctcttttatctttaaaagcggcgaatttgggacttataattatagacgaa
gagcataaattcggtgttaaacaaaaagaaaaactaaaagagataagcgaacactctcat
atactttctatgtcggctactcctattccaagaagtttaaatatggctttaagtaaagtt
aaaagttatagcactcttttaacgccgccgcttgatagaatggatgtaagaacatttgtc
aaagagtgggatgagaagcttataaaagaggttatattaagagagattagaagaggaggt
cagatattttacgtgcataatttaatatctgatatgccaagtatggagcgagaattaaaa
gctttgataccgaatttaaaagttttaacgcttcatagtaagatagacgcaaaaactacc
gaagatgagatgatgaaatttgcaaataaagagtatgatctgcttctttgcacaagtatc
atagaaagcggtattcatttgccaaatgctaatactattataatcgatgacgcaaataaa
tttgggattgcggatttgcatcagttaagaggaagagtcggtaggagcaataaacaaggc
tattgctactttttggtcggcgataaaaatgagcttagtagtgaagccgtaaaaaggctt
attgctcttgaaagtaattcgtttttgggctccggagcacttcttgcttatcatgattta
gaaattagaggtggcgggaatttgctcggagaggctcaaagcggtcatatagaagctatc
ggatatacgctttatctaaaaatgcttgaagatgagataaacttgcttttaaatcatcaa
acaaaagagatgactcaaatagatataaaacttagcgtaaatgcatttttaaatactgat
ctcataaatgaagatagaatcaggcttgaactatacagacgtcttagcaaatgccaaaat
gtaagtgaagtttatgagctaggagcagaaattgaagatagatttggcaaacttgatgct
tacactaagcaatttttagatattatagtcataaagattttggcctgcgaacaagggttt
aaatctgtgagtaattatgaacaaaatataagcttaactaaaattgacgatacgaaggtt
attttaaagtcaaggagtaaagatgatgatgacgtacttgcacaaactctggcatattta
agaaagaattcatcatga
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