Corynebacterium freneyi: I6L56_05415
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Entry
I6L56_05415 CDS
T08562
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cfy
Corynebacterium freneyi
Pathway
cfy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cfy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
I6L56_05415 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cfy03400
]
I6L56_05415 (mfd)
Enzymes [BR:
cfy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
I6L56_05415 (mfd)
DNA repair and recombination proteins [BR:
cfy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
I6L56_05415 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
Col-Pyo_DNase
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
QXA53778
LinkDB
All DBs
Position
complement(1245905..1249546)
Genome browser
AA seq
1213 aa
AA seq
DB search
MIARTVNNTKNAKAVPMVAPLSGLAQVVAGEPQLRGVVKHLGDPELHLTGNDRVRPYLIA
ALAAKTPVLAVTATGREAEDLTAELRAMLGEGAAMFPSWETLPHERLSPAVDTVATRRAV
LAGMKSGKVRVVVAAVRSLVQPVLDDGAEPIRLAVDAEVPDLPEKLESHGYSRVDMVGRR
GQFAVRGGIVDVFPATADNPVRVELWGDEITELRLFSVGDQRTISEEEGAAPLGAVDVHA
CRALLLDDDVRARAGELAGERSGDVQEMLVRISEGQWVDGMEALIPLLTDRPLVPLTKLL
PDGAHTLLCGPERIRSRAADLITTGEEFMAAAWETAAMGGGAPIPSDGLEASAYRHIDDV
RRAPWWTMSPPGMLDGGVTEDDVLPLTYEPGPEPRGDLKAIGAMMAQLRQATVDGQRVAY
VAGTPAGVRRQAEKFREAGIACRIATGPEQPEPGRITVYQGVSHGGLVFPRTDGGALTVI
AEADVTGNRVTDIGGGRRKPAKRRNRVDPLALTAGDYVVHDTHGIGRFVKLTERTIGTGD
DMARREYVVLEYASGKRGGPPDQLYVPMESLDQLTRYVGGEKPTLSKMGGSDWKSTKRKA
RGAVREIAEELVKLYAERQAAPGHAFAPDSPWQAEMEDNFPFAETEDQLTAIAEIKADME
KPAPMDRVLIGDVGYGKTEVALRAAFKAVQDGKQVAVLVPTTLLAQQHLATFSERMEGFP
VTIRGLSRFTSTREAKEIITGLAEGTVDIVIGTHRLLQTGVTWKELGLVIVDEEQRFGVE
HKEHIKALRNHVDVLTMSATPIPRTLEMSMAGIREMSQILTPPEDRHPVLTYVGAQSDKQ
IAAAIRRELLRDGQVFYLHNKVSTIDKAAQKVRDLVPEARVVVAHGQMGEDMLERTVQGF
WDREFDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRERAYAYFLYP
ADQTLTETSYDRLSTIAQNNDLGAGMAVAMKDLEMRGAGNVLGAEQSGHISGVGFDMYVR
LVGEAVAALKAVADGETPDASAQEPKEIRIDLPVDANIPASYVDSERLRLEAYRKFASAQ
ALEDVDVVLDELSDRYGEPPVEVQRLAAISRLRIICREFGVHEVQATGSHIKIGPMELAD
SKQVRLKRLHPQSTYRAASRTVSVAVPKEGKGLRAKPVRDVALVQWVADFLTGMAGIPVM
DIVGGAHGGKDRK
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
atgatcgcgaggaccgtgaacaacaccaaaaacgccaaggccgtgccgatggtcgccccg
ttgtcggggctggcccaggtggtggcgggtgaaccgcagctgcgcggcgtcgtcaagcat
ctcggcgacccggagctgcacctgaccggcaacgaccgcgtccgcccgtacctcatcgcg
gcgctggcggcgaaaacccccgtgctggcggtgaccgccacgggccgggaggcggaggat
ctgaccgcggagttgcgtgcgatgctcggcgagggcgcggcgatgttcccgtcgtgggag
acgctgccgcacgagcggctgtcgccggcggtggacacggtggccacgcgccgggcggtg
ctggccgggatgaagtcggggaaggtccgcgtcgtcgtcgcggcggtgcggtccctggtg
cagccggtgctcgacgatggagccgaaccgatccgcctcgccgtcgacgcggaagtgccg
gacctgccggaaaagctcgaaagccacggctactcacgggtggacatggtcggccgccgc
ggccagttcgcggtgcgcggcggcatcgtcgacgtgttccccgccacggccgacaacccg
gttcgcgtggagttgtggggcgacgagatcacggaactgcgcctgttctccgtcggcgac
cagcgcaccatctccgaggaggagggcgccgcaccgttgggcgccgtcgacgtccacgcc
tgccgggccctgcttctcgacgacgacgttcgggcgcgcgccggggaactcgccggcgag
cgttccggtgacgtgcaggagatgctcgtgcgcatttcggaagggcaatgggtcgacggg
atggaggccctcatcccgttgctcaccgaccggcccctggtgccgctgacgaaactgctt
cccgacggcgcccacacgctgctgtgcgggccggaacgcattcgttcgcgtgccgcggac
ctcatcaccaccggcgaagagttcatggccgccgcatgggaaaccgcggcgatgggcggc
ggcgcgccgatcccgtccgacggactggaggccagcgcctaccgacacatcgacgacgtc
cgccgcgccccctggtggacgatgtccccgcccggcatgctcgacggcggcgtcaccgaa
gacgacgtcctgcccctgacctacgagccgggccccgaaccgcgcggcgacctcaaggcc
atcggcgccatgatggcccagctgcgtcaagccacggtcgacggccaacgagtcgcctat
gtggcgggcacgccggccggcgttcgtcgtcaagccgaaaagttccgggaggccggcatc
gcctgccgcatcgccaccggccccgaacagcccgaacccggacgaatcaccgtctaccag
ggcgtcagccacggcggcctggtgttcccccgcaccgacggcggcgcactgaccgtcatc
gccgaagccgacgtcaccggcaaccgggtcaccgacatcggcggcggacgccgtaaaccc
gccaaacgccgcaaccgcgtcgacccgctggccctcaccgccggcgactacgtcgtgcac
gacacccacggcatcgggcgattcgtcaaactcaccgaacgcaccatcggcaccggcgat
gacatggcgcggcgcgaatacgtcgtgctggaatacgcctccggcaaacgcggcgggccg
cccgaccagctctacgtgcccatggaaagcctcgaccagctcacccgctacgtcggcggc
gaaaaacccaccctgtcgaagatgggcggctccgactggaagagcaccaaacgcaaggcc
cgcggcgcggtccgcgaaatcgccgaggaactggtcaagctctacgccgagcggcaggcc
gcgccgggccacgccttcgcgcccgactcgccgtggcaggcggagatggaggacaacttc
cccttcgccgaaaccgaggaccagctcaccgccatcgcagagatcaaggccgacatggag
aagcccgcgccgatggaccgcgtgctcatcggcgacgtcggctacggcaaaaccgaagtg
gccctgcgcgccgcgttcaaggcggtgcaggacggcaagcaggtggcggtgctcgtgccc
acgaccctgctggcccaacagcacctggcgacgttctccgagcgcatggagggcttcccc
gtgaccatccgaggcctgagccgcttcacgtcgacgcgcgaggcgaaggagatcatcacg
gggctggccgagggcaccgtcgacatcgtcatcggaacccaccgtctgctgcagaccggc
gtgacgtggaaggagctgggcctggtcatcgtcgacgaggagcagcgcttcggcgtcgag
cacaaggagcacatcaaggcgctgcgcaaccacgtcgacgtgctgacgatgtcggcgacg
ccgatcccgcgcaccctggaaatgtcgatggccggcatccgcgagatgagccagatcctc
accccgccggaggaccgccatcccgtgctgacgtacgtcggcgcgcagtcggacaagcag
atcgccgcggccatccgccgcgagctgctgcgcgacggccaggtgttctacctgcacaac
aaggtcagcaccatcgacaaggccgcccagaaggtccgcgacctggtgccggaggcccgc
gtcgtcgtcgctcacggccagatgggcgaggacatgctcgaacgcaccgtccaggggttc
tgggaccgcgagttcgacgtgctggtgtgcacgacgatcgtggaaaccggcctggacatc
gccaatgccaacacgctgatcgtggaaaacgcccaccacatgggcctgtcgcagctgcac
cagctgcgcggccgggtgggccgttcccgcgaacgcgcctacgcctatttcctgtatccg
gcggaccagactttgacggaaacgtcctacgatcggctgtccaccatcgcgcagaacaat
gatctcggcgcgggaatggccgtggcgatgaaggacctggaaatgcgcggcgcgggaaac
gtgctcggcgcggaacagtccggccacatttccggcgtcggtttcgacatgtacgtcaga
ttggtcggcgaggcggtcgccgcgttgaaggcggtcgccgacggcgaaacgcccgacgcg
tcggcgcaggaaccgaaggagatccgcatcgatttgcccgtcgacgcgaatatcccggcg
tcctacgtcgattcggagcggctgcgcctggaggcgtacaggaagttcgcgtcggcgcag
gccctggaggacgtcgacgtcgtcctcgacgagttgtcggaccggtacggggaacctccg
gtggaggtgcagcggctcgcggcgatttcccgattgcgcatcatttgccgcgaattcggc
gtgcatgaagttcaggcgacgggttcgcacattaagatcgggcccatggagctcgccgat
tcgaagcaggtgcgtttgaagcgcctgcatccgcaatcgacgtatcgggccgcatcgcgg
accgtttccgtggccgttccgaaggaagggaagggcctgcgagccaagccggtgcgtgat
gtcgcgctcgttcagtgggtcgcggatttcctgaccggcatggcgggaattcccgtcatg
gacatcgtcggcggcgctcacggcggaaaggatcggaaatga
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