Chryseobacterium gambrini: PFY09_14345
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Entry
PFY09_14345 CDS
T08920
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
cgam
Chryseobacterium gambrini
Pathway
cgam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PFY09_14345 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgam03021
]
PFY09_14345 (rho)
03019 Messenger RNA biogenesis [BR:
cgam03019
]
PFY09_14345 (rho)
Transcription machinery [BR:
cgam03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
PFY09_14345 (rho)
Messenger RNA biogenesis [BR:
cgam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PFY09_14345 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
NACHT
AAA_25
AAA_22
AAA
Rho_N
Motif
Other DBs
NCBI-ProteinID:
WBV51508
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All DBs
Position
3141144..3142994
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AA seq
616 aa
AA seq
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MFNIETLRSKSVTELTKILKDLGVKVARNSTENDKIFAILDFQASNPKVAKEYFNATETS
MNTEEKPAEKPAKATARKAAPKKTTAKTKAEAKPAEETNPKAEEKAEAEVKETVSEEPKP
EETKAEPAAATEEQTATGQAKKKRKRVSPANTTNAEAPQEKIEAPKNTESQESAPAEEKP
NNTPQHQARSQKGQNNNPNNNGNQHRNQNHNQNPNQNQNQHQNKQQQQHSEKTEEQYEQP
KKEFSFDGMVSIEGVLEILPDNYGFLRSSDFSYISSPDDVYVSTAQIRNYSLKTGDTVKG
IVRLPKEGEKYFSLLRPTEVNGRDLAFIKDRVAFEYLTPLFPQEKFNLAGKGSTISTRVV
DLFAPIGKGQRAMIVAQPKTGKTMLLKDIANSIAANHPEVYMMVLLIDERPEEVTDMERS
VNAEVIASTFDEAAEKHVKVANLVLAKAQRMVECGHDVVILLDSITRLARAYNTVTPASG
KVLSGGVDANALHKPKRFFGAARKIEGGGSLTIIATALIDTGSKMDEVIFEEFKGTGNME
LQLDRKIANRRIYPAIDLVSSSTRRDDLLLDEVTSQRMWILRKYLSEMNPIEAMEFVDKN
IKGTLNNEEFLMSMNK
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgtttaacattgaaacgttaaggtcaaaatccgtaacggaactgactaaaatcttaaag
gatttaggcgttaaagttgcaagaaacagcactgaaaatgacaaaatctttgcaattctt
gactttcaggcttccaatccaaaagtagcaaaagaatatttcaacgctactgaaaccagt
atgaatactgaggaaaaaccggcagaaaaacctgcgaaggctactgccagaaaagctgct
ccgaaaaaaacgacagctaaaacaaaagctgaagcaaaacctgctgaagaaacaaatcct
aaagcagaggaaaaagctgaagcagaagtaaaagaaaccgtttctgaagaacctaaaccc
gaagaaaccaaagcagaacctgcagcagcaacggaagaacagacggcaacaggacaggct
aagaaaaagaggaaaagagtttctcctgccaatacaaccaacgcagaagcgcctcaggaa
aaaatagaagctcccaaaaacacagaatcccaagaatctgctccagcagaagaaaagccg
aataatacccctcaacatcaggctagatcccaaaaaggacaaaacaacaatccgaacaac
aacggaaaccagcatagaaatcaaaaccataaccaaaatccgaatcaaaaccaaaatcag
catcagaataagcagcaacagcagcattctgagaaaacggaggaacagtacgaacagcct
aaaaaggagttcagtttcgacggaatggtaagcattgaaggggttttggaaattttaccg
gacaattacggatttttacgttcttcagacttcagctatatctcttcaccggatgacgta
tacgtttctacggcacagatcagaaattacagcctgaaaacaggagataccgtaaaaggg
attgtaagattaccgaaagaaggagaaaagtatttttccttattaagacccacagaagtt
aacggacgtgatcttgctttcattaaagaccgtgtggcttttgaatatttaaccccgctt
ttcccacaggaaaaattcaatcttgccggaaaaggctctactatttctaccagagtagtg
gatcttttcgcacccatcgggaaaggacagagagcaatgatcgttgcacagccgaaaacc
ggtaaaaccatgttgctgaaagatattgccaattctatcgcagccaatcatcctgaagtt
tatatgatggttcttctgatcgacgaacgtccggaagaggttaccgatatggaaagaagc
gtaaatgcagaagttattgcatctacttttgatgaagcggcagaaaagcacgtaaaagtg
gctaaccttgttctggcgaaagcgcagagaatggtagaatgtggacacgatgtggtgatt
ttattagactccatcacaagattggcaagagcttacaataccgtaactcccgcatcggga
aaagttttatcgggaggtgttgatgcgaatgcgcttcacaaaccgaaaagattcttcgga
gctgcaagaaagattgaaggaggagggtctttaacaattatcgcaacggctcttattgac
actggttctaaaatggatgaggtgatctttgaagaatttaaaggaacaggaaacatggaa
cttcaactggacagaaaaattgccaacagaagaatttatcctgctatcgatctcgtttct
tcaagtacccgtagagacgacctgcttctggatgaggtaacttcccagagaatgtggatc
ttaagaaaatatctttctgaaatgaatccaatcgaagcaatggaatttgtagacaaaaac
atcaaaggaacgttgaataacgaagaattcctgatgtcgatgaataaataa
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