Clostridium gasigenes: J1C67_05275
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Entry
J1C67_05275 CDS
T07299
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cgas
Clostridium gasigenes
Pathway
cgas03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cgas00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
J1C67_05275 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cgas03400
]
J1C67_05275 (mfd)
Enzymes [BR:
cgas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J1C67_05275 (mfd)
DNA repair and recombination proteins [BR:
cgas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
J1C67_05275 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
MFD_D3
IstB_IS21
DUF1664
Motif
Other DBs
NCBI-ProteinID:
QSW21384
LinkDB
All DBs
Position
CGAS001:complement(1059928..1063440)
Genome browser
AA seq
1170 aa
AA seq
DB search
MRLKGLIKPLENSDKFKEIIKDINSNRHPVNIYGVSESGKSYILDGIYENLETPVVIVTH
SEMAAKNLYEDLSFYTTDVYYFPTKEVVFYNIDAISGDLRWARLKVIKEMLNNKKKIIIT
SIDAFAAVYTPKELYKNYSFILKTGDEVNFKDLSKKLVESGYERVEIVEVKGEFSLRGGI
LDVFPPNSAYPFRVELFGDEIDSMRTFNIQSQRSIEKISTFEIFPAKEIIIAEESLTRAK
EKITKELETVKNEISNPKSEIIQKLQMNVNRNLESLTENLSFETMDSYLPYFYENPQDLF
SYLEGYTYIVDDVKRCEGKLDSLYFEFNENYSAFLQRGDILPKQVDLLIGKDELVEKLKS
KKIITLDTFATKNELINPLSIIGLNQITLHNYQGQLELLIEDIQDKKSKGYKTLILAGTR
SRGERLASTLRDRNIESVYKDDVSSIEFGEVVITFGNLSSGFEYPDLRLSVISDKEVFGV
AKKTVTKKTQKRKGIAKIKSFAELKPGDYVVHASNGVGVYKGIKQITVAGSTRDYLDIVY
DKGDKLYVPVDQLDLVQKYIGSEGRSPKVSKLGGAEWQKAKQKVKKSINEIAEDLVKLYA
ARSILKGYKYSKDTQWQRQFEDEFPFEETPDQLTSIEEIKEDMESDKPMDRLLCGDVGYG
KTEVAIRAAFKAVMDGKQVAFLVPTTILAEQHYKNLIKRFSDFPVKIDMVSRFRSVKEQK
ATLQAVKEGNIDILIGTHRLVSKDIVFKDLGILIVDEEQRFGVAQKEKIKSLKKNVDVLT
LSATPIPRTLHMSLTGARDISVIETPPEERYPIQTYVVEQNDQLIRDAILREINRDGQVY
FVYNRVESIQVMATHIQELVPECKVCIIHGQMTERQLEKEMVKFMSNEYNVLVCTTIIET
GIDISNVNTMIVHDSDKMGLSQLYQLRGRVGRTNRIAYAYFVYTKDKVLTEIAEKRLKAL
KDFTELGSGFKIAMRDLEIRGAGNMMGSSQHGHMAAIGYDLYCRMLEDAIKIIKGEIEKE
PVQTTVDIKVDAYISANFIQDEIQKIEVYKKIAAIESLEEYMDVKEELEDRYSDIPDPVY
NLMDIAYIKSRAKLLSIEEIKETPKEVKFKFAEGFRDINSIYKVLLEKYKGKVFLMFGNN
PYFSVKSSEVKKDEALGFYKNMLDEIIKNS
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atgagattaaagggattgattaaacccttagaaaacagcgataaatttaaagaaataata
aaggatataaacagcaatagacatcctgttaatatatatggtgtttctgaatctggaaaa
agttatattttagatggaatatatgaaaatctagaaacgccagtagtaattgttacacac
agtgagatggcagcaaaaaacctttatgaagatttaagtttttatacaacagatgtgtac
tacttcccaacaaaagaagtagttttctataatatagacgctatttctggggatcttaga
tgggcaaggttaaaagttataaaagaaatgttaaataataaaaagaaaattattattact
tcaatagatgcttttgcagcggtatatacgcctaaggagttatataaaaattatagcttt
atattaaaaacaggggatgaagttaattttaaagatttatctaaaaaacttgtggaaagt
ggatatgaaagagtggaaatagtagaagtaaaaggtgaattttctttaagaggagggata
ttagatgttttccctcctaattcagcgtatccatttagagtagaactatttggtgatgaa
atagattcaatgagaacttttaatatccaatctcaaagaagtatagaaaaaataagtact
tttgaaatattcccagctaaagagataattatagctgaagaatctttaactagagctaag
gaaaaaataacaaaagaattagaaacagttaaaaatgagatttctaatccaaaatcagaa
ataatacaaaagttacaaatgaatgtaaatagaaacttagaaagtttaacagaaaattta
agttttgaaactatggatagttatttaccttatttttatgaaaacccacaggatttattt
agttatttagagggatatacatacattgtagatgatgtaaaaagatgtgaaggtaaattg
gatagtttatattttgaatttaatgaaaattattcagcatttttacaaagaggagatata
cttccaaaacaagttgatttattaattgggaaagatgaattagtagaaaaacttaaaagt
aaaaagataataacattagatacttttgcgactaaaaatgaattaataaatcccttatca
attattggtttaaatcaaataacacttcataactatcaaggacaacttgaattgttaatt
gaagatatacaggataaaaaaagtaagggttataagaccttaatactggcaggaactaga
agtagaggagagagactggcctcaactttaagagatagaaatatagaaagtgtatataaa
gatgatgtttcatctatagaatttggggaagttgtaataacttttgggaatttatctagt
ggatttgaatatccagatttaagattaagtgtaatatcagataaagaagtttttggtgtg
gctaagaaaacggtaactaaaaaaacacaaaaaagaaaaggtattgcaaaaataaagagc
ttcgcagaattgaagccaggagattatgtagttcacgctagtaatggagttggagtatat
aagggtataaagcaaataactgttgcaggaagcactagggattatttagatatagtttat
gataaaggtgacaaactttatgttccggttgatcaattagatttagttcaaaagtatatt
ggtagtgaaggcagatcacctaaagtcagcaaactaggtggagcagagtggcaaaaagct
aaacaaaaggttaaaaaatctataaatgaaattgctgaagatttagtgaaactttatgct
gctagatctatattaaaaggttacaaatatagtaaagatacacaatggcaaagacaattt
gaagacgagttcccctttgaggaaactccagatcaattaacttcaattgaagagataaag
gaagatatggaatcagataaaccaatggatagattgctttgtggtgatgttggatatggg
aaaactgaagtagctataagagctgcttttaaagcggttatggatggaaaacaggtagca
tttttagtaccaacaacaatacttgcagaacaacattataaaaacttaattaagagattt
tcagattttcctgttaaaattgatatggttagtagatttagaagtgttaaagaacaaaaa
gctacattgcaagcagttaaagaagggaatatagatatattaattggaactcatagatta
gtatcgaaggacattgtatttaaagatttaggaattcttatagtagatgaggaacaaaga
tttggagttgctcaaaaagaaaagattaaatcattaaagaaaaatgttgatgtattaact
ttaagtgctacaccaataccaagaactcttcatatgtcgttaacaggggcaagagatatc
tctgtaatagagactcctccagaagagagatacccaattcaaacttatgtagtagaacaa
aatgatcaacttataagagatgctattttaagggaaattaatagagatgggcaggtttac
tttgtttataatagagttgaaagcatacaagttatggcaactcatattcaagaattagtt
ccagaatgtaaggtttgtattatacatggacagatgactgaaaggcagttagaaaaagag
atggttaaatttatgagtaatgagtacaacgtattagtatgtactactattatagaaacc
ggaatagatatttctaatgtaaatactatgattgttcatgattcagataaaatggggctt
tctcagctttatcaattaagaggaagagtaggaagaactaataggattgcttatgcttat
tttgtttacacaaaagataaagtgttaactgaaatagcagaaaaaagacttaaagcatta
aaagatttcacagaacttggttcaggatttaaaatagctatgagagaccttgaaataaga
ggcgctggaaacatgatgggatcatcccaacatggtcatatggcagctattggatatgat
ttgtattgtagaatgcttgaagatgcaattaaaataataaagggcgaaattgaaaaagag
cctgtacaaacaactgtagatattaaagtagatgcatatatttcagcaaactttatacaa
gatgaaattcaaaaaatagaggtttacaagaaaattgcagccattgagagtttagaagag
tatatggatgttaaagaagaacttgaagatagatattcagatattccagaccctgtatat
aacttaatggacatagcatatataaaaagcagagctaaattgttatctatagaagagata
aaagaaactccaaaagaagttaaatttaaatttgctgaaggatttagagatattaatagt
atttataaagtattattagaaaaatataaaggaaaggtattccttatgtttggtaataat
ccatatttctcagttaaatccagtgaggtgaaaaaagacgaagccttaggattctataaa
aacatgttagatgaaataataaaaaatagttaa
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