Cupriavidus gilardii: CR3_4453
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Entry
CR3_4453 CDS
T04050
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cgd
Cupriavidus gilardii
Pathway
cgd03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cgd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CR3_4453
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cgd03400
]
CR3_4453
Enzymes [BR:
cgd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CR3_4453
DNA repair and recombination proteins [BR:
cgd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CR3_4453
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ALD93632
UniProt:
A0A0M4KNS6
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All DBs
Position
2:1876302..1879256
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AA seq
984 aa
AA seq
DB search
MATKRAAKQPAKAAAKRTGKQTPAAAAKGAATRSTSRAAARPAAPRAARGANPDPLQRYR
TMRDFGTTAEPAGRAVAQRAAAKTAEALSFVVQKHAARRLHYDFRLELDGTLKSWAIPKG
PSLDPADKRMSVHVEDHPLEYANFEGVIPERQYGAGTVIVWDRGTWVPIGDPHQGYRDGK
LKFELQGEKLHGAWTLVRMRGRDERQEPWLLIKERDDAARPAAEFDITEAMPDSVLGGGT
PSADDEGARKASAKSATSTAARKAPRTAAKAATGSASGKGAAAGKSAGKTAGKGRSAAGA
IQLPSAARRAALPLTLAPQLATLVQGPPVDAQNWIYELKFDGYRVLARIEGSDVKLFTRN
GHDWTSKLKTLARELGTLNLPSAWLDGEIVIVDKDGSTDFQALQNAFDSERTDAIQFFVF
DIPFYAGHDLRQVALVERRDLLRRLFEEHNVSAHLRFSESFEAGPEEILSAACRLRLEGL
IGKRVDAPYVSARSPNWIKLKCSERQEFVIGGFTEPKGTRNGLGALLLGIHDESGRLIYA
GKVGTGFDTKTLDTIRAKLDALRTDASPFDKMPAIAKGVKGIWVRPKAVAEVSFGSWTRD
GLIRHAVFHGLRSDKSASAIGKEKAMPAPGKSVGEAKAAATARKGKKDKAGDKPAESARK
AAHADRAESADTPPSDKPAAATKSSSGRQQIGNVRVSHADRVIDPSTGATKGDLVRYYEA
VAPRMLPELRGRPLAVLRGPSGVGGELFFQKHAETFNIAGVNRLDPSLWPGHPPMIEVAS
ETGIVAAAQLNVIEFHTWNADKRQIEKPDRVIFDLDPGAGVPWKHVVEAAALTKGMLDEL
ELTAFLKTSGGKGLHVVVPIARRLGWDEVKDFAQALVVHMAKTIPQRFVSKSGPRNRVGK
IFIDYLRNGRGATTVAAFSARARPGLGVSIPCSWDELPALRSGAQWTIANALARIEETEH
ADPWADYGSTRQTLTAAIRRLGNG
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atggcgacaaagcgagcagcaaagcagccggccaaggccgcagcgaagcgaaccggcaag
cagacccctgcagccgcggccaaaggcgcggccacacggtcgacgtcgcgcgccgccgcg
cgtccggcggcaccgcgcgcggcgcgaggcgcgaatcccgacccgctgcagcgctatcgc
acgatgcgcgactttggcacgacggcggaaccggccggccgcgcggtcgcccagcgtgcc
gcggcgaaaaccgccgaagcgctgtcgttcgtcgtgcagaaacacgcggcgcgccgcctg
cactacgacttccgcctcgaactcgacggcacgctcaagagctgggccattccgaagggt
ccaagcctggacccggccgacaaacggatgagcgtccacgtcgaggaccacccgctcgaa
tatgcgaacttcgaaggcgtgatccctgaaaggcagtacggcgccggcaccgtgatcgtc
tgggaccgcggcacctgggtaccgatcggcgatccgcatcagggctatcgcgacggcaag
ctgaagttcgagctgcagggcgagaagctgcatggcgcctggacgctggtacggatgcgg
ggccgggacgaacggcaggaaccgtggctgctgatcaaggagcgcgacgatgcggcgcgg
ccggcggcggagttcgacatcaccgaggcgatgccggacagcgtgctcgggggtggcacg
ccgagcgccgacgacgagggcgcgcgcaaggcatcggcgaagagcgcgaccagcaccgcg
gccaggaaggcgccgcggacggcggcgaaagccgcgacaggatcggcttcgggcaagggg
gcggcagctgggaagagcgccggcaagacggccggcaaaggccggtccgccgccggcgca
atccaactgccgagcgccgcgaggcgcgcggcgctgccgctgacgctggcgccgcaactg
gcgacgctggtgcaaggcccgcccgtcgatgcgcagaactggatctacgagctcaagttc
gacggctatcgcgtgctggcccgcatcgagggcagcgacgtcaagctgttcacgcgcaac
gggcacgactggacatcgaagctgaagacgctggcgcgcgagctcggcacgctgaacctg
ccatcggcgtggctggacggcgagatcgtcatcgtcgacaaggacggcagcaccgatttc
caggcgttgcagaacgccttcgacagcgagcgcaccgatgcgatccagttcttcgtgttc
gacatccctttctatgccggccacgatctgcgccaggtcgcgctggtcgagcgccgcgac
ctgctgcgacgactcttcgaagaacacaacgtgtcggcgcacctgcgtttcagcgagagc
ttcgaagccggccccgaggagattctcagcgcggcctgccggctgcggctcgaggggctg
atcggcaagcgtgtcgatgcgccgtacgtgtccgcgcgctcgccgaactggatcaagctc
aaatgcagcgaacggcaggagttcgtgatcggcggcttcaccgagcccaagggcacgcgc
aacggcctgggcgcgctgctgctgggcatccacgacgaatcgggccggttgatctatgcc
ggcaaggtcggcaccggcttcgacacgaagacgctcgatacgatccgcgccaagctcgat
gccctgcgcaccgatgcctccccgttcgacaagatgccggcaatcgccaaaggcgtgaag
ggcatctgggttcggccgaaggcggtcgccgaggtgtcgttcggctcgtggacgcgcgac
gggctgatccgccatgcggtgttccatggcttgcggtcggacaagagcgccagcgcgatc
ggcaaggaaaaggcgatgccggcccccggcaagagcgtgggcgaggcgaaagccgcggcg
acagcgcgcaaggggaagaaggacaaggccggcgacaaaccggcggagtccgccaggaag
gcggcccacgccgaccgggctgagagcgccgatacgccgccgtcggacaaacccgctgca
gcgacgaagtcctcctccggccgccagcagatcggcaacgttcgcgtcagccatgccgat
cgcgtcatcgatccgtcgaccggcgcgaccaagggcgacctggtgcgctactacgaagcg
gtcgcgccccgcatgctgccggaattgcgcggccgcccgctggcggtgctgcgtggcccg
tccggcgtcggcggcgagctgttcttccagaagcatgccgagaccttcaacatcgccggc
gtcaatcggctcgatccgtcgctgtggccgggccacccgccgatgatcgaggtcgccagc
gagaccggcatcgtcgccgcggcgcagctcaacgtgatcgagttccatacgtggaacgcc
gacaagcgccagatcgaaaagcccgatcgcgtgatcttcgacctggaccccggcgcgggc
gtgccctggaagcatgtggtcgaggcggccgcgctgaccaagggcatgctcgacgagctc
gagctgacggcgttcctgaagaccagcggcggcaagggcctgcacgtggtggtgccgatc
gcgcgccggctcggctgggacgaggtcaaggactttgcccaggcgctggtcgtccatatg
gcgaagaccatcccgcagcgcttcgtctccaagagcgggccgcgcaaccgcgtcggcaag
attttcatcgactacctgcgcaacgggcgcggcgccaccacggtggccgcgttctcggcg
cgcgcccggccgggcctgggcgtgtcgatcccctgcagctgggacgagctgccagcgctg
cgctcgggcgcgcaatggacgatcgccaacgcgctggcgcgcatcgaagagaccgagcat
gccgatccctgggcggactacggcagcacgcgccagacgctgaccgccgccatccggcgc
ctcggcaacggctga
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