Cryptococcus gattii: CGB_H2410W
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Entry
CGB_H2410W CDS
T02232
Name
(RefSeq) component of RNA polymerase transcription factor TFIIH; Ssl1p
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
cgi
Cryptococcus gattii
Pathway
cgi03022
Basal transcription factors
cgi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cgi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
CGB_H2410W
09124 Replication and repair
03420 Nucleotide excision repair
CGB_H2410W
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgi03021
]
CGB_H2410W
03400 DNA repair and recombination proteins [BR:
cgi03400
]
CGB_H2410W
Transcription machinery [BR:
cgi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
CGB_H2410W
DNA repair and recombination proteins [BR:
cgi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
CGB_H2410W
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
DZR
Motif
Other DBs
NCBI-GeneID:
10189526
NCBI-ProteinID:
XP_003195680
UniProt:
E6RAQ4
LinkDB
All DBs
Position
H:join(540217..540354,540407..540525,540580..540684,540741..540865,540937..541579,541649..541751,541824..541976)
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AA seq
461 aa
AA seq
DB search
MPLDLNYAPGSEDEEEDNIDDEDFPGPSSRRHGRGAAGKRKGKNKDAGRQAWEGEYQKSW
DIVQEDESGSLESAVETLLARGRRKRALMSDTPVRRSIIRHLFIIIDLSESMLDKDYRPS
RFEVILGYLRTYVVEWFDQNPLGQIGVIVMRDRLSEVVIPMGGSPEEIVRALSDKRKLEP
SGEPSLQNGLVMAKGGMAHLPSTSSLETLVIFSAISTADPDGPITIHNVLDTLVTGHIRT
SILSLSGEIKICKQIAERTGGKFGVALDQDHLKDLLWETIPPPATTITPVTANVRSALAA
GGRGPNQTGGRAPAGDLMVMGFPIRLPLGGETMCACHGLLRKGGYLCPRCGSKLCDVPTD
CEVCGLMVVSSPHLARSFWFLFPVANYGPLAIEDVVGSSGTCFGCDSEFSDTSAINAGVA
QVEDGVSPAGRYRCAKCKHDFCADCDLYIHDTLHTCPGCSQ
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgcctctcgatctcaactatgcaccgggatcagaagatgaggaggaagacaacattgat
gacgaagactttccaggtccatcttcacggagacatggtaggggagctgctggaaagcgc
aaaggcaagaacaaggacgccggaaggcaggcttgggaaggggagtaccagaaatcatgg
gatatcgttcaagaggatgagagtggttcactagagtctgctgtagaaactcttctcgca
cgaggcagacggaaaagagcgttaatgtcagataccccagtgagacggtctattatccgg
cacttgtttattatcatcgacttgtccgaatccatgttagataaggattaccggccgtca
agattcgaggtcatcctaggataccttcgaacatatgttgtcgaatggttcgatcagaac
cctctaggccaaatcggtgtcattgttatgcgtgaccgattatcagaggtcgtcataccc
atgggaggaagtccagaggagattgtccgtgccctttcggacaagcgtaaactcgaaccc
tcaggcgaaccgtcactccaaaacggtcttgtcatggccaagggcggtatggcccattta
ccctccacctcttcccttgaaaccctcgtcatcttctccgccatatccactgctgacccc
gacggaccgatcactatccacaatgtgctcgatactctggtgacaggacatatacgcaca
tcgatcctctctctctcgggggaaattaagatttgtaaacaaatcgcagaaaggacggga
ggtaaatttggtgtagctctagatcaagaccatttaaaggatttattatgggaaacgatc
cctccgcccgcaacgaccatcacccctgtcacagccaacgtccgctcagcgctcgccgct
ggtggccgcggtccgaaccaaacaggcgggcgagcgcctgcaggcgatctcatggtcatg
gggttccccattcggttaccacttggtggagaaaccatgtgcgcctgtcacgggttgctg
agaaagggaggatatctctgtcctagatgcgggagtaagctgtgtgatgtgccgacggat
tgtgaggtatgtggtctgatggtggtcagcagtccccacctcgcccgaagcttttggttc
ttattccctgtggccaactatggtccattggccatcgaggatgtggtgggatccagtggg
acatgctttggctgtgatagcgagttttccgatacttccgcgatcaatgctggcgtagcc
caagttgaagatggtgtgagccccgcaggacggtataggtgcgccaagtgcaagcatgat
ttctgtgccgactgtgatctttacatccacgatacgctacatacctgcccagggtgttcg
cagtag
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integrated database retrieval system
