Cryptococcus gattii: CGB_N1600W
Help
Entry
CGB_N1600W CDS
T02232
Name
(RefSeq) subunit of TFIIH and nucleotide excision repair factor 3 complexes
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
cgi
Cryptococcus gattii
Pathway
cgi03022
Basal transcription factors
cgi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cgi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
CGB_N1600W
09124 Replication and repair
03420 Nucleotide excision repair
CGB_N1600W
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgi03021
]
CGB_N1600W
03400 DNA repair and recombination proteins [BR:
cgi03400
]
CGB_N1600W
Transcription machinery [BR:
cgi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
CGB_N1600W
DNA repair and recombination proteins [BR:
cgi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
CGB_N1600W
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
10186516
NCBI-ProteinID:
XP_003197492
UniProt:
E6RG20
LinkDB
All DBs
Position
N:join(326636..326754,326835..326951,327005..327133,327185..327400,327450..327579,327618..327909,327969..328229,328288..328469)
Genome browser
AA seq
481 aa
AA seq
DB search
MVQPSFSAPKKDVSKQASLTSALDIFLDNQHQSYFEELYRLLPPVCRQIILHALWSHHPL
RVTDVKLLLQMDVHAPLEECDEVMRPAINRKVLHPMHYKKQKMQWSLNDSFKRGLRNALT
GLGASNSFGVPFERHQATDLDLPSKDELVAYGEETFESILKYMVSSGLGTEFSGSRPQPE
VLQLLHASGLMTDPGDMSRRNPNIYRLTITSKGFQFLLEKRQTQLWEILMYYLSAKEANS
ERSSEVLSMFFSLGCMQLGQDYSASNSFPHAQEALNDLAQYGFIYKPSPDSDQFWPTHLA
TSLCSGDASAIQSQSADDKRFLILETNYKIYAYTSNELEIAILNLFVDIRIRYPNLVVGK
LDRQHVKAAMEKGISARQIIAYLSSHAHPQMYNSPPPLLHPTIVDQLHLWDRERNRLQTE
ETVMYEFFSKELFDDTVNEAKANAALQHAATSQKLLFIEPHTKPAITEFVKQRQNVLRGG
Y
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atggtacaaccttccttttcagcccccaagaaggatgtttccaagcaagcatcactgacg
tctgccctcgatatatttctcgataatcagcaccagtcgtatttcgaggagctctacaga
ttactgccgccagtatgccgtcaaattatcctccatgccctgtggtcccaccatccatta
cgagtgaccgatgtcaagctgcttctccagatggatgtccacgctcctttagaagaatgt
gatgaggtcatgagaccagctataaacagaaaagtcctccatccaatgcattataagaag
cagaaaatgcagtggtccttgaatgattcgttcaagaggggcctcagaaacgccttgaca
ggattaggagcatcaaactctttcggtgtaccctttgaaagacatcaggcaactgacctt
gatcttccctctaaggatgagctagtggcatatggcgaagagacatttgagtctattctc
aaatacatggtgtcttccggtctcggcacagaattctctggatccaggccacagcccgag
gttctccagcttttacatgctagcggtctcatgacggatcctggagatatgagcaggagg
aatcctaatatatatcgactcacaatcacttccaaaggattccaatttttgctggagaaa
aggcagactcagctgtgggagatactaatgtactacttgagtgccaaagaagcaaactct
gaacggtcatccgaggtcttgtcgatgttcttctctcttgggtgtatgcaactaggacaa
gactattctgcatccaactcttttcctcacgctcaagaagctctcaacgatctcgcgcaa
tacggcttcatctacaaaccatcgcctgacagcgatcagttttggcccacccaccttgcc
acttctttgtgttccggcgacgcttccgccattcaatcgcagagtgcagacgacaagcgt
ttcctcatcttggaaaccaactacaaaatttacgcatatacttcaaacgagctcgagata
gccatccttaacctctttgtcgacattcgcattcggtaccccaacctcgttgtgggaaag
ctcgatcgtcagcacgttaaagctgccatggaaaagggtatatcagcgcggcagattatc
gcctacttgtccagtcatgctcatccacaaatgtacaactctcccccaccattactacat
cccaccattgtcgatcaacttcatttgtgggatcgagagaggaacagattacagacggaa
gagaccgttatgtacgaatttttcagcaaagaactctttgatgacactgtcaacgaagcc
aaagcgaatgccgctctacagcatgcggctacgtcccaaaagctattattcatcgagcca
cataccaagcctgcgatcacagaattcgtcaagcaaagacagaacgtccttagagggggt
tattag
DBGET
integrated database retrieval system
