Carassius gibelio (silver crucian carp): 127935641
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Entry
127935641 CDS
T08819
Name
(RefSeq) general transcription factor IIH subunit 4-like
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03022
Basal transcription factors
cgib03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
127935641
09124 Replication and repair
03420 Nucleotide excision repair
127935641
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgib03021
]
127935641
03400 DNA repair and recombination proteins [BR:
cgib03400
]
127935641
Transcription machinery [BR:
cgib03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
127935641
DNA repair and recombination proteins [BR:
cgib03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
127935641
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
127935641
NCBI-ProteinID:
XP_052389677
LinkDB
All DBs
Position
A19:complement(10173331..10180050)
Genome browser
AA seq
466 aa
AA seq
DB search
MKLRVQLQCKNLHEYLKELSPEILDRLYNHPATCLAVYRELPSLAKNYVMRMLFLDHPLP
QAAVALWVKKDSQKDHDQCVSVLTGLRLWHSQHLQGGLQGFVLNPVFKDNLRTALLGGGK
PWADEGSNLGPDRHVRDVERLDRYAMERWEVILHFMVGSPSAAVSQDLAQLLIQAGLMKS
ETGEAPCITSAGFQFLLLDTASQLWYFTLQYLKTAQSRGMDLVEILSFLFQLSFSTLGRD
YSVEGMSESLLTFLQHLREFGLVFQRKRKSRRYYPTRLAITLAAGVTVNPASGSASTALG
ATAGTGDTGFIVVETNYRLYAYTNSELQIALVALFSEMLYRFPNLVVAQVTRESVQQAIA
NGITAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELEKDRLQFTEGVLYNQFLSQV
DFEVLRDRAQGLGVLVWQNPAHRVMVVTPHGHSEVKRFWKRQKSHT
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgaagcttcgagtccagctgcagtgcaagaacttgcacgagtatctgaaggaactgagt
ccagagatcctcgacagactctacaatcacccagcgacatgtctggcagtctacagggaa
cttccatcactggcaaagaattatgtgatgcggatgctgtttttagaccatcctcttcca
caagctgcagtcgcgttgtgggtcaaaaaagacagtcaaaaagaccatgatcagtgtgtg
tcggtcttaaccgggctacggctctggcacagtcagcacctccaaggtggacttcaaggc
ttcgtgctgaaccctgtttttaaagacaacctgagaacagcacttctaggcgggggtaaa
ccgtgggcagatgagggtagtaacctgggtcctgatcgtcatgtgagggatgtagagcgt
ctggaccgctatgccatggagcgctgggaggtcatccttcacttcatggtgggctctccc
agcgcagccgtcagccaggatctggcccagctcctcatacaggccgggctcatgaagagc
gagactggtgaggctccttgtatcacatcggcagggtttcagttcctgctgctggacaca
gcatctcagctgtggtacttcaccctgcagtacctcaagacagcacagtcaagaggaatg
gacctggtggagattctttcctttttgttccagctgagtttttccactcttggtagggat
tattctgtggagggcatgagtgagtctctgctcacatttttgcaacatttacgagagttc
ggtctggttttccaaagaaagaggaagtcaaggaggtactaccccaccaggttggccata
actctagctgcaggggtcacagtaaaccctgcctctggatctgcttcgactgcactcgga
gccacggcgggaacaggagacacaggcttcatcgttgtagaaacgaattaccgtctgtat
gcctacacaaactctgagctccagattgcactagtagctctatttagcgagatgctgtat
cggtttcctaacctggtggttgcacaggtaaccagagagtcagtgcagcaggccatcgct
aacggcattactgcacagcagatcattcacttcttaaggacccgagctcacccagtaatg
cttaaacagacccctgttcttcccccaaccatcacagatcagatcagactgtgggagctc
gagaaagatcgcttacagttcactgagggagtgttatacaaccagtttctatcccaggtt
gattttgaagtgttgcgggacagggctcagggtttaggtgtgctggtttggcagaacccc
gctcacagggtcatggtggtgacgccacatggacacagcgaggttaagagattctggaag
agacaaaagagccatacatag
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