Carassius gibelio (silver crucian carp): 127950705
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Entry
127950705 CDS
T08819
Name
(RefSeq) regulator of nonsense transcripts 1-like isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03013
Nucleocytoplasmic transport
cgib03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
127950705
03015 mRNA surveillance pathway
127950705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
127950705
Enzymes [BR:
cgib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
127950705
5.6.2.5 RNA 5'-3' helicase
127950705
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
127950705
mRNA cycle factors
Common to processing body (P body) and stress granule
127950705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
127950705
NCBI-ProteinID:
XP_052403849
LinkDB
All DBs
Position
B2:30233234..30251584
Genome browser
AA seq
1100 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTQGHTQSQLDSQVNG
PDGVLPNGDDAVVKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDMAPLWKGIGHV
IKVPDNYGDEIAIELRSSAGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGY
IYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTV
TSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLA
LHNQIRNMDSMPELQKLQQLKDETGELSSSDEKRYRALKRTAERELLMNADVICCTCVGA
GDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGL
SQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTATDRIKKGFDFQWP
QPDKPMFFYVTQGQEEIASSGTSYLNRTEASNVEKITTRLLKAGAKPDQIGIITPYEGQR
SYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLN
VALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLV
NTINPGARFMSTAMYDAREAMIPGSVYDRSSTGRPSNMYFQTHDQVGMIGTGPNPMGSMN
IPIPFNLMMPPMPPPGYLGQVNGPAAGRGAPKGKTGGRGGRQRNRGTGNHGSGQANMSSS
QASQDLVSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQMDVALSQD
STYQGERAYQHGGVTGLSQY
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcgcagacgctcaccttcctggacacggaggaa
gcggagctgctcggggccgacacgcagggctccgagttcgagttcaccgacttcacgctg
cccagccagacccaaactcagggccacactcagagtcaactcgacagccaggtgaatggg
cctgatggtgttctgcccaacggagacgatgcagtggtgaagaccagccaacttctagcc
gagctgaactttgaggaggatgaggaagatacttactacactaaagatttgccggtgcac
gcctgcagctactgtggcatccatgatccagcatgtgttgtctattgcaacaccagcaag
aaatggttctgcaacggccgcggaaacacctctggcagtcatattgtgaaccacttggtg
agggccaaatgtaaggaggtgacgctgcataaggacgggccgctgggagagacggttctg
gagtgctataactgcggctgccgtaatgtgttcctgctcggcttcatcccggctaaagcc
gactctgtcgtggtgcttctgtgcaggcagccgtgtgccagtcagagcagtctgaaggac
attaattgggacagctctcaatggcagcccctcatccaggaccgctgcttcctgtcctgg
ctggtgaagatcccgtccgagcaggagcagctgagggcacgtcagatcaccgcacagcag
atcaataaactcgaggagctctggaaggaaaacccaacggcgaccctggaagatttggag
aaacctggagtggacgaggaacctcagcacgttctgctgcgatatgaagatgcctatcag
taccagaacatctttgggccgctggtcaaactagaggctgactatgacaagaaactcaaa
gagtcccaaactcaagacaatataacagtgaggtgggatttgggactgaataaaaagcgg
atagcttatttcactctgcccaagacggattcaggtgacatgcgactgatgcaaggagac
gagatctgtctgcggtataaaggagacatggctccgctgtggaaagggatcggacacgtc
atcaaagtcccggacaattatggagatgaaatcgccatcgagctgcgcagcagtgctggt
gcacctgtggaggtaacacataacttccaggtggactttgtctggaaatccacatctttt
gaccgcatgcagagcgccctgaagacgtttgctgtggacgagacctctgtgtccggctac
atctatcacaagctgctgggtcacgaggtggaggacgttatcatcaaatgccagctgccc
aaacgcttcactgcgcagggcctgccagatcttaaccactcacaggtttatgctgtgaag
acggtgctgcagcgacccctgagtctgatccaggggcctccaggaaccggaaagactgtc
acctctgccaccatcgtctatcatctggccagacagggcaatggtccggttctggtttgt
gctccgagtaacatcgcagtggatcagctgacagagaagatccatcagacggggctgaag
gtggttcgtctgtgcgctaagagtcgtgaggccatcgattccccggtgtctttcctggct
ctgcacaatcagatccgcaacatggacagcatgccagagttgcagaaactgcagcagctg
aaggacgaaactggcgagctgtcgtcttctgatgagaaacgctaccgagctctcaaacga
accgctgagagagagctgctcatgaatgcagatgtgatctgctgcacatgtgtgggtgcg
ggtgaccctcgcctggctaagatgcagtttcgctccatcctcatcgatgagagcacacag
gccacggagcccgaatgcatggtgccagtggtgctcggggccaaacagctgattctggtg
ggtgaccactgtcagctgggtcctgtggtcatgtgcaagaaagcagctaaagcaggtctg
tctcagtctctgtttgagaggctggtggtcctgggcatcagacccatccgtctgcaggtg
cagtaccgcatgcacccggccctcagcgctttcccttcaaacatcttctacgagggctct
ctgcagaacggggtcaccgccaccgatcgcatcaagaaaggctttgacttccagtggcct
cagcccgataagcccatgtttttctatgtaactcaaggccaggaggagatcgcaagctct
ggcacctcctatctcaacaggaccgaggcgtctaatgtggagaagatcaccacccgtctg
ctgaaagccggagccaaacccgaccagatcggcatcattacaccctacgagggccagcgc
tcttacctggtgcagtacatgcagttcagcggctctctgcacaccaaactataccaggag
gtggagatcgccagcgtggatgcgttccagggcagagagaaggacttcatcatcctgtct
tgtgtcagagctaatgagcaccagggcatcggcttcctgaacgacccacggcgtctcaat
gtggcactaaccagagccagatatggcgtgatcattgtgggcaaccctaaggctctgtcc
aagcagcctctgtggaaccacctgctcaactactacaaggagcagaaggttctggtggaa
ggaccactcaacaacctgagagagagcctcatgcagttcagcaaaccacgcaagctggtc
aacaccatcaaccctggagcccgtttcatgagtactgccatgtatgacgcgagagaggcc
atgattcctggatctgtgtatgatcgcagcagcactgggcgtccgtctaatatgtacttc
cagacccatgaccaggtgggcatgatcgggaccgggccgaaccccatgggctccatgaac
atccccatcccgttcaatctgatgatgcctcccatgcctccgcctgggtacctgggacag
gtgaacggacccgctgccggtcgtggtgctcctaaaggtaagactgggggtcgtggaggt
cgtcagaggaaccgtggcaccggtaatcacggcagcggacaggccaacatgtcaagcagc
caggccagtcaggatctagtgtcccagcccttctctcagggtccactgacccagggctac
atcaccatgagccagccgtcacagatgagccagcctggactgtcccagcccgagctctct
caggatagctacctgggtgatgagttcaaatcccagatggacgtggcgctttcccaggat
tccacctaccagggagaacgggcttatcaacacggaggagtgacgggactctcacagtac
tag
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integrated database retrieval system
