KEGG   Carassius gibelio (silver crucian carp): 127951483
Entry
127951483         CDS       T08819                                 
Name
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
cgib  Carassius gibelio (silver crucian carp)
Pathway
cgib03030  DNA replication
cgib03410  Base excision repair
cgib03420  Nucleotide excision repair
cgib03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cgib00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    127951483
   03410 Base excision repair
    127951483
   03420 Nucleotide excision repair
    127951483
   03430 Mismatch repair
    127951483
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cgib03032]
    127951483
   03400 DNA repair and recombination proteins [BR:cgib03400]
    127951483
Enzymes [BR:cgib01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     127951483
    6.5.1.6  DNA ligase (ATP or NAD+)
     127951483
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     127951483
DNA replication proteins [BR:cgib03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    127951483
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     127951483
DNA repair and recombination proteins [BR:cgib03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     127951483
   NER (nucleotide excision repair)
    Other NER factors
     127951483
   MMR (mismatch excision repair)
    Other MMR factors
     127951483
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C eIF-3c_N
Other DBs
NCBI-GeneID: 127951483
NCBI-ProteinID: XP_052405324
LinkDB
Position
B2:complement(25960712..25975972)
AA seq 984 aa
MQRSIASFFQPMKSKEKSDGQVKTKTEPLKSPLKIQNGVQESDSPVKKVHKRSRAIIDSD
DEDQPIVKEQLPKQSEAEPAKPEQESDVTKAVSTPVSPKTPITPTTPLTSSTSVVVVTPA
SSGTPGTPTSTSPSGIPKRKTARKQFPKRKLESRSDGEGAKEEEKEVNEGQESKRARVEA
SPEQTDNEMMEVEEKREDGKTAVEEQKEKDEAKTTVVEDNANNNMKGKEKKKVKQEKKIN
GENGKKEKKEDKKEKEHSSPERAVKKEKSTEEEGGSAKKKPISSFFAPRKAAVKLEKEER
NEGEKKKDGEISDAAEQKEKKSEKGVDSAVQSQYDPSRAHYHPIDHACWVKGQKVPYLAV
ARTFEKIEEDSGRLKNIETLSNFLRSVILLSPDDLLCCVYLCLNQLGPAYQGLELGIGET
ILMKAVAQATGRQLDKIKAEAQEKGDLGLVAESSRSNQRMMFAPANLTAGGVFNKLKEIA
NMSGNSAMNKKIDIIKGLFVACRFSEARYIVRSLAGKLRIGLAEQSILTALSQAVCLSPP
GQEFPPAVLDAGKGMSAENRRVWLEEKSLILKQTYCEMPNYDAIIPVLMKEGIDELPNHC
KLTPGVPLRPMLAHPTKGVGEVMKRFDEASFTCEYKYDGERAQIHILENGEVRIFSRNQE
DNTSKYPDIISRIPQVKKENVRSCVLDSEAVAWDREKKQIQPFQVLTTRKRKDVDASEIK
VQVCVYAFDLLYLNGESLVREPLSKRRALLRESFEEKEGEFVFARSLDADNTESIAEFLE
QSVRDSCEGLMVKTLEKHATYEIAKRSHNWLKLKKDYLEGVGDTVDLCVIGAYLGKGKRA
GSYGGFLLACYDEENEEFQSVCKIGTGFKDEDLEQHYNFLKEHILPKPRPYYRVDQSAEP
DVWLEAVQVWEVKCADLSLSPVYKAAMGLVDPEKGISLRFPRYLRIRDDKKPEDATTGSQ
IADLYKKQQQIQNQGEKQDLEDYY
NT seq 2955 nt   +upstreamnt  +downstreamnt
atgcagcgaagtatagcctcattctttcagccaatgaaaagtaaggagaagagtgatgga
caggtcaaaacaaagactgaacccttaaaaagtcccctcaaaattcagaatggtgtgcag
gaaagtgattcaccagtaaagaaggtgcataaacgcagtcgcgcaatcatagacagcgat
gatgaagatcagccgatagtaaaagagcagctgccaaaacagagtgaagctgaaccagca
aagccagagcaggaatctgatgttacaaaggctgtttccactccggtttctccaaaaact
cccataaccccaacgactccgctcacgtcgagtacctctgttgtggtggttacccctgct
tcctccggtactcctggaactccgacatcaacatcgccgtccggcattcccaaacgcaag
accgcccgcaagcagttccccaagaggaagctggaaagcagaagtgatggagaaggggca
aaagaggaggaaaaggaggtcaatgaagggcaggagagtaagagagcacgagttgaggcc
tcacctgaacagacagacaacgagatgatggaggtggaagagaagagagaagatgggaag
actgcagtggaggaacagaaagagaaggatgaagcaaaaacaaccgtagtggaggacaat
gcaaacaataatatgaaaggaaaggagaaaaagaaggtaaagcaggagaaaaagataaat
ggagagaatgggaagaaagaaaaaaaagaagacaagaaagagaaggaacacagcagtcct
gaacgagcggttaaaaaagaaaaaagcacagaagaggaagggggatcggccaaaaagaaa
cccatcagcagcttttttgcacccagaaaggcagctgtcaaactggaaaaagaggagcga
aatgagggagaaaaaaagaaggacggagagatctctgatgctgctgaacagaaagagaag
aaaagtgaaaagggggtggattctgcagtccagagccagtatgatccctccagagctcat
taccatcccattgaccatgcctgctgggtgaagggccaaaaagtgccatatttggctgtc
gctcgcacctttgagaagattgaagaggattcaggcaggctgaagaacattgaaacgctt
tccaactttctgcgatctgtaattctgctttctccagatgacctgttatgctgtgtgtac
ctgtgtctgaatcagctcggccctgcatatcagggtctggagctgggcattggggagacc
atcctgatgaaagctgtggctcaggcaactgggcgacaactggacaaaatcaaggcagag
gctcaggagaaaggtgacctgggattggttgctgaaagttctcgcagtaaccagagaatg
atgtttgcaccggccaatctgacagcagggggcgttttcaacaaactgaaagagattgct
aacatgagtggaaattctgcaatgaataagaagattgacattattaaaggcttgtttgtg
gcgtgtcggttttctgaggcccgatacattgtgcggtcactggctgggaagctgcggatc
ggattggctgagcagagcattctcacggctctcagtcaagctgtgtgtctgtcgcccccg
ggccaagagttcccaccagctgtgctggatgctgggaaaggaatgagtgctgaaaacagg
agagtgtggctggaggagaaatcactgatcctaaaacagacatactgtgagatgccaaat
tatgatgcaatcattcctgtattgatgaaggagggcatagatgaactgcccaatcactgc
aagctcaccccaggtgtgcccctgcggcccatgttggcccacccgactaaaggggttggg
gaggtaatgaaacgtttcgatgaggcatctttcacctgcgagtataaatatgatggagag
agagcccagatccatattcttgagaatggagaggtgcgcattttcagccgaaaccaagaa
gacaacaccagcaaataccctgatattatttcacgaatcccacaggtgaagaaagagaac
gtacggtcctgtgttctggattcagaggcggttgcctgggacagagaaaagaaacagatc
cagccatttcaggtcctcaccacaaggaagagaaaggatgtggatgcatctgagatcaag
gttcaggtgtgtgtgtacgcctttgatctgctgtacctcaacggagagtctctggtgcgg
gagcctctgagcaaacgcagggctctgttacgggagagttttgaggagaaagaaggagag
tttgtttttgctcgatctctggacgctgacaacacagagagcattgctgagttcctggag
cagtctgtacgagattcttgtgagggcctaatggtgaagacattggaaaaacatgcaact
tatgagattgccaaacgctcccacaactggctcaagctgaagaaggactatcttgagggt
gttggagatacagtggatctgtgtgtgattggtgcttatctggggaaggggaagagagca
ggcagctatggaggatttctactggcctgctacgatgaggagaacgaggagttccagtct
gtctgcaagattggaacaggcttcaaagatgaagatctggagcaacattacaatttctta
aaggagcacatcttaccaaaaccacgtccatattaccgtgtggaccaatcagcagagccg
gatgtctggctggaggcggtgcaagtgtgggaggtgaaatgcgctgacctttcactgtct
ccggtttacaaggcagcgatgggattggtggacccagagaaaggcatttcacttcgtttc
ccacggtacctcaggattagagatgacaaaaagccagaggacgccaccacagggtcacag
attgcagatctttacaagaaacagcagcagattcaaaaccagggtgaaaagcaagatctg
gaggactactattga

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