Carassius gibelio (silver crucian carp): 127963520
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Entry
127963520 CDS
T08819
Name
(RefSeq) histone deacetylase 6-like
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
cgib
Carassius gibelio (silver crucian carp)
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cgib01009
]
127963520
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
127963520
04131 Membrane trafficking [BR:
cgib04131
]
127963520
03036 Chromosome and associated proteins [BR:
cgib03036
]
127963520
Enzymes [BR:
cgib01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
127963520
Protein phosphatases and associated proteins [BR:
cgib01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
127963520
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
127963520
Membrane trafficking [BR:
cgib04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
127963520
Chromosome and associated proteins [BR:
cgib03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
127963520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
DUF6377
Motif
Other DBs
NCBI-GeneID:
127963520
NCBI-ProteinID:
XP_052419426
LinkDB
All DBs
Position
B8:complement(5186130..5199730)
Genome browser
AA seq
1086 aa
AA seq
DB search
MDTVPDSKGSTRSPRGTPETKRENNKPNHKKNLQEVRRKGRMDRRKDEEEMSNELQNLDV
RGKTKATGTGLVYIDAFTRFHCLWDASHPECPARVSTVMEMLETEGLLGRCVRVEARAAS
VDELLLVHTKEYVELMKSTQKMTEDELKTLADKYDSVFLHPEFFTSACLAAGSVLQLVDK
VMTSQLRNGFSINRPPGHHAHADKMNGYCMFNHLAIAARYAQKQHGVKRVLIVDWDVHHG
QGIQYIFEKDPSVLYFSVHRYEDGSFWPHLKESDCSSVGSGPGQGYNINLPWNKIGMEDG
DYVTAFQQLLLPVAYEFQPQLVLVAAGFDSVIGDPKGEMRASPQCFSILTHMLKGVAQGR
LVLALEGGYNLQSTAEGVCASVRSLLGDPCPHLISPGAPSESALKSISKTISALYPFWKS
LQMFEGGPLSDVPPLPAPVCAEVKASSLITGLVYNQRMMLHHNMWDGHHPELPQRISRIF
CQHEELGLLSRCLRIPARLATEEELGLCHSAEHISTMKSTEHMKPRDLHRLGNSYSSIYI
CNESYTCALMAAGSCFNSVQAILTGQVRNGVAIVRPPGHHAEKDTACGFCFFNTAALTAR
YAQCITHKSLRILILDWDVHHGNGTQHIFEEDDSVLYISLHRYEDGTFFPYSEDANYDKV
GKGKGRGYNVNIPWSGGKMGDPEYLVAFHHIVMTIAREFAPELVLVSAGFDAARGDPLGE
YQVTPEGYAHLTHQLMSLAAGRVLVILEGGYNLTSISESMSMCTSMLLGDSPPPLNHLPP
PKTNATVTINNVLRALAPFWSSLRIQIPESLRLALPSPKAKGKRASAGRGKKSPRQTAPA
QSPGQTAQHLEQSGLDELSKDLLSLNLNTSTSSNPSPASVPIGGARRKVKPSPQRDSAGR
EPDSPLKLTSEKARAGDGTHAEITTDRTIAESVVTGSTAAVDDQENSVLEAAGGQATRMS
VFEVFGAQTTDMDTMYVVDPLPWCPHLESVRPVPAGGIDVFLPCEECGGDTENWICLFCY
KVLCGRYVNQHMVTHGQESGHSMVLSFADISVWCYACESYVHNKVLHEAKNAAHLMKFGE
EILPFN
NT seq
3261 nt
NT seq
+upstream
nt +downstream
nt
atggatactgttccagattccaaaggttctactcgatcaccaagaggaacaccagaaacc
aaaagagaaaacaacaaaccaaaccacaagaagaatctacaggaggtacggaggaaggga
agaatggatcggcgcaaagatgaggaggagatgagcaatgagctccaaaacttggatgtt
cgtggtaagactaaagcaactggaacaggtcttgtctacatagatgcctttactcgcttt
cactgcctctgggatgccagtcacccagagtgtccagcgagagtgagcacagtgatggag
atgctggagacggaaggtctgctgggacgctgtgtacgagtagaggccagagctgcgtca
gtagatgagctgttactcgttcatacgaaggagtatgtagagctgatgaaatccactcag
aaaatgacagaggatgagttgaagacgctagctgataaatatgactccgtcttcctgcat
cctgaatttttcacctctgcgtgtctggcggcgggatcagttctccagctggttgataag
gtgatgacatcgcagctgcgtaacggcttctccatcaacagacctcctggtcaccacgct
catgctgataagatgaacggctactgtatgtttaatcatctggccatagcagcgcgctac
gctcagaaacagcatggagttaagcgagttctgattgtggattgggatgtgcatcacgga
cagggaatccagtatatctttgagaaggatcccagtgtgctgtatttctcagtgcacaga
tatgaagacggctcgttctggccgcacctcaaggagtctgactgcagctcggttggttca
ggaccaggacagggctataatatcaacctgccctggaacaagatagggatggaggatgga
gattacgtcacagctttccagcagctgctcctgcctgtggcctatgagttccagcctcag
ctggtgttagtggcggccggatttgactctgtgatcggtgacccaaagggtgagatgaga
gcgagtccacagtgcttctccatcctgacccacatgctgaaaggtgtagctcagggacga
cttgtgctggctcttgagggtggatataacctccagtccacagcagagggtgtttgtgct
agtgtgaggtcactgctgggtgacccttgccctcatctgatctctcctggtgctccgagt
gaaagtgccctgaagtccatctcaaagaccatctcagccttgtatccattttggaagagc
cttcagatgtttgagggtggtcctctgtccgatgtccctcctctgcccgctccagtgtgt
gcagaagtgaaggcctcctctctgatcactggactagtttataaccagagaatgatgctt
catcacaacatgtgggacggtcatcatcctgagctccctcagagaatttcacgcatcttt
tgccagcatgaggagttgggtctgctgtcccgttgccttcggataccagctcgcctagca
acagaagaagagctgggactctgtcacagtgctgaacacataagtactatgaagagtaca
gagcacatgaaacctagagatctgcaccgactgggaaacagttacagctccatctacatc
tgtaatgagagctacacctgcgccctgatggccgctgggtcgtgttttaactccgtacag
gccatactcacaggccaggtgagaaacggcgtggccatagtccgtcctcctggtcatcat
gcagagaaagacacagcttgtggtttctgtttctttaatacggctgctttgaccgcacgc
tacgcacagtgcatcactcacaagtccctgcgcatcctcatcctcgattgggatgttcat
catggaaacggcacacagcacatctttgaggaggatgacagtgttctgtacatctctttg
catcgctacgaggatgggacattcttcccctattcggaggatgctaactatgataaggtt
gggaaagggaaaggcagaggatacaatgtcaacatcccctggagtggaggaaagatggga
gacccagaatacttggtggctttccatcacatagtgatgacgatagccagagagtttgcc
ccagagctggtgctggtgtctgctgggtttgatgcagcacgaggcgatccgttaggagag
tatcaggtgacccctgagggctacgcccacctcacccatcagttaatgagcctggctgca
ggaagagtgcttgtcatactggagggaggatataacctcacctccatctccgagtcaatg
tccatgtgcaccagcatgttgctgggagactctcctccacctctaaaccatctgccacct
ccaaagaccaatgccaccgtcaccattaacaatgtcctgcgtgctctcgcccccttctgg
agctccctgagaatacagattccagagtcacttcgtttggctttgccatctcctaaagcg
aaaggcaagcgggcatcagcgggcaggggcaagaaatctcctcgccagaccgcccctgcc
caaagtcctggacagacagcgcagcatcttgagcagtcaggccttgatgagctcagtaag
gacctgctctccctaaatctcaacacaagtacctcatctaaccccagcccagcttcagtc
cccattggaggagccagacggaaggtgaaacccagcccacagagggattcagccggccgg
gagccagattcaccactaaaactcacgtcagagaaagccagagctggagatggcacacat
gcagagattacgacggaccggacgatcgcagagtctgtggtcactggaagtacagctgcc
gtggatgaccaggagaactcggtgctggaggctgctggcggtcaagccaccaggatgtca
gtcttcgaagtctttggagcacaaaccacagatatggacaccatgtatgtggtggaccca
ttgccatggtgcccacacttggagtcggtgcgaccagtgcctgcaggtggcatcgatgtc
ttcctgccgtgtgaagagtgtggaggtgatacagaaaactggatctgcctcttctgctac
aaggtgctctgcgggcgttatgtgaaccagcacatggtgacccacgggcaggagtcgggt
cactctatggtgctgagctttgctgacatctcggtctggtgctacgcttgtgagtcatac
gtccacaacaaggtgctccatgaagccaaaaatgccgctcacctcatgaagtttggagag
gagattcttcctttcaactaa
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