Carassius gibelio (silver crucian carp): 127975548
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Entry
127975548 CDS
T08819
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG9
KO
K18735
protein SMG9
Organism
cgib
Carassius gibelio (silver crucian carp)
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
127975548
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
127975548
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg8_Smg9
ABC_tran
AAA_16
AAA_30
MMR_HSR1
DUF6079
AAA_18
Motif
Other DBs
NCBI-GeneID:
127975548
NCBI-ProteinID:
XP_052435666
LinkDB
All DBs
Position
B16:17851611..17858328
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AA seq
503 aa
AA seq
DB search
MSESGHSQPGIYGQGRRRRRRRDRDPGPAAQNLSGPSRDRDYVPRERRDGSEEPTGPLLQ
KTPIILAKPPGERSKPSVPASGAPSEKPIMLIKTRDEGGKPGNPPDVAPSVSGAGTAKLE
REGQRPTQPVYQIQNRGMGSAASGGAVDPVIGQTKLLPPEKMKHSIKLVDDQMNWCDSAM
EYLRDQTDMLVVGVIGLQGTGKSTIMSLLSANSPEEDQRAYVFRAQTQEIKERAGNQSSG
IDFYITQERVIFLDTQPILSPSILDHLINNDRKLPPEYNLPHTYVEMQSLQITAFLFTVC
HVVIVIQDWFTDINLYRFLQTAEMLKPSTPSASHDSSGSSGADDGSEYYPHIVFLQNKAR
REEFCPRNLKKMHMAVDKLMAHSHLKYKGTLSMLDCNIFPGLNRDYLETEVNLFLLPMME
NDGEDALTRAGSGPPLFSLLPGYRGHPSFSSLVSKFRSQILAMSRSQLSHTILTEKNWFH
YAARIWDGVKKSSALSEYSRLLS
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgtcggagtcgggtcacagtcagcccgggatctacggacagggaaggaggcggcggcgg
cggagagaccgagacccaggaccagcggctcaaaacctctccggacccagtcgagatcga
gactatgttccccgtgagcgcagggatggcagcgaggaacccacaggacctcttctacag
aagactcccattatacttgctaagcctcctggagagcgatccaaaccaagtgtgccagca
agtggagccccatcagaaaagccgatcatgctcattaaaaccagagatgaaggggggaag
cctgggaaccctcctgatgtggctccttcagtctcaggtgcaggaactgccaaactggag
agggaaggccagcggccgacccaacctgtgtatcaaatccagaacagaggcatgggatca
gctgcatctggtggagctgtggatcctgtgattggccagactaagctcctcccccctgag
aagatgaagcacagcattaagctagtggatgaccaaatgaattggtgtgacagcgctatg
gagtacctgcgagaccagacggatatgttagtagttggggttattgggctacaaggcaca
ggcaagtccacaatcatgtctctcctgtctgcaaacagccctgaggaggaccagagggcg
tatgtgttcagagctcagacgcaggaaatcaaggagagagctgggaaccagagcagtgga
atcgatttctacatcactcaggagagggtcatctttctggacacgcagccaattctaagc
ccctctattttggatcatctcattaacaatgaccgcaagcttcctccagaatacaatcta
ccacatacatatgtggagatgcagtctctgcagatcactgccttcctctttaccgtatgc
catgttgtgattgtgattcaggactggttcactgatatcaacttatataggtttctgcag
actgctgagatgctgaaaccctcgactccatctgccagtcatgacagcagcggctcctca
ggggcagatgatggctcggagtattatcctcacatagttttcttgcagaacaaagcaagg
agggaggagttctgtccacggaatctgaagaagatgcatatggcagttgacaagcttatg
gcccattcccacctaaaatataaaggcaccttatccatgctggattgtaacatattccca
ggactgaatcgggattacttggagacagaagtcaatcttttcctcttacctatgatggag
aatgatggggaagatgctttgacaagagcaggttcaggtccccctctcttctcactgctg
cctggttacagaggtcatcccagcttttcttcactggtttctaaattccgcagtcagatc
ttggctatgtcccgcagtcagctctcacacacaatcctcactgagaaaaactggtttcat
tatgcggctagaatttgggatggtgttaagaaatcatctgcgctgtctgaatatagccga
cttctgtcatag
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integrated database retrieval system
