Carassius gibelio (silver crucian carp): 127985769
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Entry
127985769 CDS
T08819
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46 isoform X1
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127985769
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cgib03041
]
127985769
Enzymes [BR:
cgib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127985769
Spliceosome [BR:
cgib03041
]
Complex A
U2 snRNP components
U2 related factors
127985769
Complex B
127985769
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CdAMP_rec
PMI_typeI_cat
Motif
Other DBs
NCBI-GeneID:
127985769
NCBI-ProteinID:
XP_052443870
LinkDB
All DBs
Position
B21:4849220..4877358
Genome browser
AA seq
1029 aa
AA seq
DB search
MGRESRHYRKRSGSRSKSRSPDSKRLKKEEQTGSRARERSRRERSRSRERRRSRSRDRKR
PRRSRSRERRRSRSREPRSRGRSKEKIENTEPSADKKKIKEEKEEEKPEDQDFDQNTLEE
EMRKRKERVEKWREEQRKKAMENIGELKKELEEMKQGKKWSLEDDDDDDEETQAPVEPDG
EEEEGEKEGSAGTEEETQMEQETGEELDPLDAYMEEVKEEVKKFNMGTMRGGNDKKGSVS
VTKVVTVVKTKKMVHTTKKKGELMENDQDAMEYSSEEEEVDLQTALTGFQTKQRKVLEPV
DHQKIEYESFRKNFYVEVPELARMSPEEVNEYRLELEGITVKGKGCPKPIKTWVQCGISM
KVLQAMKKHNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHILDQRPLG
EGEGPIAVIMTPTRELALQITKECKKFSKSLGLRVVCVYGGTGISEQIAELKRGAEIIVC
TPGRMIDMLGANNGRVTNLRRVTYVVMDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSA
TFPRTMEALARRILSKPIEVQVGGRSVVCSDVEQHVIVISEEKKFLKLLEILGHYQEKGS
VIIFVDKQEHADGLLKDLMKASYPCMSLHGGIDQYDRDSIINDFKNGACRLLVATSVAAR
GLDVKQLILVINYGCPNHYEDYVHRAGRTGRAGNKGYAYTFITEEQARYAGDIIKALELS
GSSVPSELEMLWANFKEQQKAEGKSIKSSSGFSGKGFKFDETEHALANERKKLQKAALGL
HDSDDEDAALDIDEQIESMFNSKKRVKDFSAPGGAAGASASGVSGSLTAVSGLSGLSAPS
AGNIQKLEIAKKLALKIQAQKNLGAEAQDVMQQATNAILRGGTMIAPSVSAKTIAEQQAE
KINAKLNYTPVEKLEEERQAAEATDTVKRYEEELEINDFPQTARWKVTSKEALQRIGEYS
EAAITIRGTYFPPGKEPKEGERKIYLAIESANELAVQKAKAEITRLIKEELIRLQNSYQP
TSKSRYKVL
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atgggacgagagtcgcggcactacaggaagcgctcgggctccaggtctaagagccgctcg
ccggactccaagcggctgaagaaggaggagcagacggggtccagggcccgcgagcgcagc
cggagagagaggtcacgcagccgagagcgccgcaggtcacgctccagagaccgcaagaga
ccgaggcgctccaggagccgagagcggagacggtcccgcagccgagagcccaggagccga
gggaggagcaaggagaagatcgagaacacagagccgtccgctgacaagaagaagatcaag
gaggagaaggaggaggagaagcctgaagatcaggacttcgaccagaacactctggaggag
gagatgaggaagaggaaggagcgcgtggagaagtggagggaggagcagaggaagaaggcc
atggagaacatcggagaactgaagaaggagctggaggagatgaagcagggcaagaagtgg
agtctggaggacgatgacgatgacgatgaggagactcaagcgcccgtggagccagacgga
gaggaagaggagggagagaaggagggatcggccgggacggaggaggagacacagatggag
caggagaccggagaggagctggacccgctggacgcttacatggaggaggtcaaggaggag
gtcaagaagttcaacatgggcaccatgagaggaggaaacgacaagaagggcagtgtgtct
gtgaccaaagtggtgaccgttgtgaagaccaagaagatggtgcacaccaccaagaagaaa
ggagagctgatggagaacgaccaggacgccatggagtattcatcagaggaagaggaagtg
gacttgcagacggccctcacaggcttccagaccaaacagaggaaagttctggagccggtt
gatcatcagaagatcgagtacgaatccttccgtaagaacttctacgtggaggtgccagag
ctggccaggatgagtcctgaagaggtgaacgagtaccgtctggagctggaggggatcacc
gtcaaaggcaagggctgtccgaagcccatcaagacctgggtgcagtgtgggatctccatg
aaagtgctgcaggcgatgaagaaacacaactatgagaagcccaccccgatccaggcccag
gccatccctgccatcatgtctggacgagacctcatcggcatcgctaaaacaggaagtggg
aagaccatcgccttcctgctgcccatgttccggcacatcttggaccagcgtccgctggga
gagggagaaggacccatcgctgtgatcatgacaccgacgcgagagctagcgctgcagatc
accaaagagtgcaagaagttctccaagtctctgggtctgcgtgtggtgtgtgtgtacggc
ggcacgggcatcagcgagcagatcgcagagctgaagcgcggcgcagagatcatcgtgtgc
acaccgggacgcatgatcgacatgctcggagccaacaacggtcgcgtgacaaacctgcgc
agggtcacgtatgtggtgatggacgaggctgaccgcatgttcgacatgggcttcgaacca
caggtgatgcgtatcgtggataacgtgcgtcctgaccggcagaccgtcatgttctcggcc
accttccctcgcaccatggaggctctggcgcgcaggatcctgtccaaacccatcgaggtg
caggtgggcggccggagcgtggtgtgttcagacgtggagcagcacgtgatcgtgatctcg
gaggagaagaagttcctgaagctgctggagattctggggcactatcaggagaagggctcc
gtcatcatcttcgtggacaaacaggagcacgctgacggactcctcaaagacctgatgaag
gcctcgtacccctgcatgtctctccacggaggcatcgatcagtacgacagggacagcatc
atcaatgacttcaagaacggcgcgtgtcgtctgctggtggccacgtctgtggcggcgcga
ggtctggacgtcaagcagctgatcctggtcatcaactacggctgtcccaaccactacgag
gactacgtgcaccgcgccggacgcacgggacgagccgggaacaagggttacgcgtacacc
ttcatcactgaagaacaggctcgttacgccggagacatcatcaaagcgctggagttgtcc
gggtcgtccgtcccgtcggagctggagatgctctgggccaacttcaaggagcagcagaaa
gctgaggggaagagcatcaagagcagcagtggattctctgggaagggctttaagttcgat
gagacggagcatgcgctggctaacgagaggaagaagctgcagaaggctgcgctgggtctg
cacgactctgacgacgaggacgcagctctggacatcgacgagcagatcgagagcatgttt
aactctaagaagcgtgtgaaggacttctctgctccgggtggtgctgcaggagcgtctgcg
tccggcgtgagtggatccctgaccgctgtgtccggtctgagtggcctgagcgctccgtcc
gcagggaacatccagaaactggagatcgccaagaaactggccctcaagatccaggcacag
aagaacctcggcgcggaggcacaggatgtgatgcagcaggccacaaacgccatcctgcgc
ggcgggacgatgatcgcaccctccgtctccgccaagaccatcgcggagcagcaggcggag
aagatcaacgccaaactgaactacacaccggtggagaagctggaggaggagcggcaggcc
gccgaggccacggacaccgtcaagagatacgaggaggagctggagatcaacgacttccct
cagacggcgaggtggaaggtgacgtctaaggaggctcttcagcgcatcggagagtattca
gaggcggccatcactatacgaggaacatatttcccaccgggcaaagagcccaaagaggga
gagcgcaagatctacctggccatcgagagtgcgaacgagctggccgtgcagaaggccaaa
gcagagatcacccggctgatcaaggaagagctgatccgtctgcaaaactcctaccagccc
accagcaagagccgatacaaggtcctgtag
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integrated database retrieval system
