Carassius gibelio (silver crucian carp): 127985821
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Entry
127985821 CDS
T08819
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127985821
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgib03021
]
127985821
03019 Messenger RNA biogenesis [BR:
cgib03019
]
127985821
Transcription machinery [BR:
cgib03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
127985821
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
127985821
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
CFIA_Pcf11
Motif
Other DBs
NCBI-GeneID:
127985821
NCBI-ProteinID:
XP_052443955
LinkDB
All DBs
Position
B21:complement(16925211..16934399)
Genome browser
AA seq
1460 aa
AA seq
DB search
MSDEGAREDACREYQSSLEDLTFNSKPHINMLTILAEENIQFTKDIVAIIEAQIAKAPPG
EKLPVLYLVDSIVKNVGGEYLEVFAKNLVNSFICVFEKVDEATRKSLFKLRSTWDEIFPL
KKLYAVDVRVNSIDPAWPIKPLPPNVNASIHVNPKFLKPTEETSPKPPAPQPPAPSLTQE
QLIRQQLLAKQKQLLELQQKKIELELEQTKAQLASSPAISSNHHAGAPARFNISQVTHTV
PSTQTKPWLPAPSEKIATRDPRINRLGTTVNAKEQVMHKKESQVTPTFQSTSEKRGQVTA
ERQSKLDKLRIPKKDNSAVEEKPKSKLVSPSGKGMLVRPRGMESEHSKTPEVSKKDPRLH
KQMHDRTDSKDEDIREKKKSSEKKDRDEGVKNMDHQKFSSTRGKLINGSLNKHERLETFL
KQEIKVNKANVRKRSRSRSHSPPLHSPKRKERRSSPKRKTRSITPPPKSGKARISKHSHN
EDAFPQSSLRDERSAKKSAPEPRRSKRPLDRAADQKDGPQLRISPAEHKDTKDSKRWRSG
WEENKHPKQSDSDLSHGRLGNQRHKTWNTNQRPPTSRIPKHHRLSVDSNIQIPEALNSAS
KRDLLRKASKRHADGEISNDEFLNVAHQINQLFQYQEERQRSDSWDESCDEGLYLSKKKQ
GAMSVAELSYLEHKSKLRRTQLQRPVQKEGQSPLDEMFYQPQHEMTEQYSESSGVHKMSG
DAVKPDREDPRRTNRPPSCTSSTFRNSPSPVKLEGTCGKSTGLPFELPLSSSPVEMDQPG
DISPRFESPNSVHSGTGPDDGPINLEGLSMQDNFLELGRSGRNLDESPGNTPTHSSEGSM
AQVNPSRHEGPNISQRFDRYKSSQAPFDEPPSHIREPRLDGPPRPYAPPPRYEGSTGGFD
GSGGPVRFPGHRFDAPHRFERFPKAHERPVRFNNPAVSHRPVRYTEPHNMVRFDPQAPIH
YDHPMHQNRFVNPPRFDNPHMQHGPQGYEEPRFPARLMNYDKPQGAVRFDGPSGGMRFEN
PVQPEPLRFDAPPVMPRYDPQGPPTYCGPNIPNQLRPQEPTMYDQTQGQAPVINPAVLPP
NFNMPPMNTYGGPAQQFTMQPNVSQASNFSVTVPTSSDFQGSFRPAPFPGPGVGNVPQPI
MGAQPFMPPNQVSFLPGSQFQQPEPEPLRQIDVNDLLSKLIFTGIIKPAQTDSTTESTST
NQTISVPEEEEEEEQEEDESVPDLTGFVLEDMKLRHDSIITKLYTGIQCYSCGMRFTASQ
TDVYADHLDWHYRQNRSEKDISKKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHE
EVVQKTQEAAKEKEFQSVKAAADVVHELCEICQEQFEMYWEEEEEEWHLKNAIRVDEKTY
HPSCYEDYKNTSSFVDCTPSPNKMLTENPLTAFIKQEQGDDASCSSIKEEPSEDNTDAPM
VKEEVQVKLEGESQTSAIIF
NT seq
4383 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacgaaggcgcgagggaggacgcgtgccgcgaatatcagtcctcgctggaagat
ctgactttcaacagcaaaccgcacatcaacatgctcaccattctagccgaagaaaacatc
cagttcaccaaggatatcgtcgcaataattgaagcacaaattgccaaggcacctcctggt
gagaagctcccagttttgtacttagtggattccatagtgaagaatgttggaggggaatac
cttgaagtgtttgctaagaacctagtcaattcctttatttgtgtatttgagaaggtggat
gaggccactagaaaaagtctcttcaaactgcgttccacatgggatgaaattttccccttg
aagaaactatatgcggtagatgtgcgtgtgaactcaatagatcctgcctggcctataaaa
ccattgccaccaaatgtgaatgccagcatacatgtcaaccctaaatttttaaaaccgact
gaagaaacctctccaaagcctcctgcaccacaacctccagctccgagcttgacacaagaa
caattgataaggcaacagttgcttgccaagcaaaagcagttgttagaacttcagcaaaag
aagatagagcttgagcttgaacaaacgaaagctcagttggcttccagtcctgctatttct
tcaaaccaccatgccggtgctcctgcacgtttcaatatctcacaagtcactcatacagtt
ccttcaacacagaccaaaccttggcttccagcaccatcagaaaaaatagcaaccagagat
cctagaataaacaggcttggtacaactgtaaatgcaaaggaacaagtgatgcataagaag
gagagtcaggtcacgccaacctttcagtctacatcagaaaaaagaggacaagtcacagct
gaaagacagagtaagttggataagttgaggattcctaaaaaggataactctgcagttgag
gaaaagcctaaatccaagttggtgtcaccatctggaaaaggtatgcttgtcagacccaga
ggaatggagtctgagcattcaaaaactcctgaagtaagtaagaaggacccaaggctacat
aagcagatgcatgacaggacagattcaaaagatgaagatatccgagagaagaaaaaaagt
tcagagaagaaagaccgagatgaaggtgtcaaaaacatggatcatcagaagttcagcagc
accaggggcaagcttataaatggttctctaaacaagcatgaaagacttgagacatttctg
aaacaagaaattaaggtgaacaaagcaaatgttagaaaaaggtctcggtcaagatcacat
tcacccccattgcattctcccaaaagaaaagagaggcgatcatctccaaagaggaaaacc
aggagtattactccaccccccaagtctggaaaggctaggataagtaaacattcacataat
gaggatgcttttccacagtcaagtcttagagatgagcgaagtgccaagaaaagtgcccca
gaaccaaggcgatcaaaaaggccacttgatagagctgctgatcaaaaagatggaccacag
ctgagaatttctcctgcagagcataaagacacaaaagatagcaagagatggaggagtgga
tgggaggagaataaacatcccaaacagtcagattcagatctctcacacggacgactaggc
aaccagagacacaagacttggaacactaatcaaagaccacccacatctcgtatacctaaa
caccatcgtttaagtgttgatagcaacatacaaataccagaagcacttaattctgcaagt
aaacgggaccttttaagaaaggctagcaaaagacatgctgatggtgaaatatccaatgac
gaattcctcaatgtagcccatcaaataaaccaactttttcagtatcaagaggaaagacag
cgatctgactcttgggatgaatcgtgtgatgagggattatatctatcaaaaaagaaacaa
ggagccatgtctgttgcagagctttcttatcttgagcataagtctaagttgagaagaaca
cagcttcagcgtccagtgcaaaaagagggccagtcacctttggatgaaatgttctatcag
cctcaacatgaaatgacggaacaatacagtgaaagctcaggagtgcataaaatgtctggt
gatgctgtaaagcctgaccgtgaagatcctagaagaaccaacaggcctccatcatgtaca
agttccacattcagaaattcaccaagtccagtcaagttagaagggacctgtgggaaatcc
acaggactgccatttgaactgccattgtcatcatctccagttgaaatggatcaacctgga
gacatcagcccacgttttgaaagtcccaacagtgtgcactctggtacaggtcccgatgat
ggtcctataaatttagagggtctttcaatgcaagataatttcttggaactgggaagaagt
ggacgaaaccttgatgaatctcctgggaatacaccaacgcactcctcagaaggatctatg
gcacaggtgaacccatcacggcatgagggaccaaatatttctcaacgatttgatagatat
aagagctctcaagctccctttgatgagccacctagccacattagagagccaaggttagat
ggtcctccaagaccttatgctcctcctcctcggtatgaaggcagtactgggggatttgat
gggtctggtggacctgtaaggtttcctggacatcgctttgatgcccctcaccgttttgaa
agatttcccaaagcccatgaaagacctgtgagatttaacaacccagcagtatcacacagg
ccagtgaggtacacagagcctcacaacatggtgagatttgatcctcaagccccaattcat
tatgaccacccaatgcaccaaaacagatttgttaatccaccaaggtttgataatcctcac
atgcaacacggtccccaaggatacgaggaaccacggttcccggctagactaatgaattat
gataaaccgcagggtgcagttagatttgatggtccatcaggtgggatgcgctttgagaac
ccggtgcagcctgaacccttgagatttgatgcaccgcctgtcatgccaagatatgaccca
caaggtcctccaacatactgcggtccaaatattccaaaccagctgagaccacaggagcca
acaatgtatgatcaaactcaaggtcaagctcctgtgataaaccctgctgttctacctcct
aatttcaacatgccacccatgaacacatatggtggcccagcccaacagtttaccatgcaa
ccaaatgtttctcaagcatctaacttcagtgtgacagtccctacgtcatcggatttccag
ggttcatttagacctgctccatttcctggtccaggtgttgggaatgttcctcagcctatt
atgggagctcaacctttcatgccaccaaaccaagtatctttcctgcctggttcccagttt
cagcagcctgagcctgagccattgaggcaaatagatgtgaacgatttgttgtcaaaactt
atattcactggaataattaaacctgcacaaacagactcgaccactgagtctacatcaaca
aatcagactatatctgtgcctgaagaggaagaggaggaggaacaagaggaagatgaaagt
gtcccagatctgactggctttgttttggaggacatgaaactgagacacgacagcattatc
accaaactgtatacaggaatccagtgctattcctgcggcatgcgttttacagcatctcag
acagatgtgtatgcagatcatttggactggcactacaggcagaatcgttcagagaaggac
atcagtaagaaagttacacaccgtcggtggtactacagtctgacggattggattgaattt
gaggaaatcgctgatcttgaggagagggcaaagagtcagttctttgaaaaagttcatgaa
gaggttgtacagaaaactcaggaagcagccaaagagaaagagttccagagcgtaaaggct
gcagcagatgtcgttcacgagctgtgtgagatttgccaggagcagtttgagatgtactgg
gaggaggaagaggaagagtggcatctaaagaatgccatcagagtcgatgaaaagacatac
catccctcatgttacgaagactacaaaaatacatcctcctttgtggactgcacaccctca
cccaataaaatgcttacagaaaaccctttaacagctttcataaaacaagagcagggtgat
gatgcatcatgctccagtattaaagaagagccctctgaggacaatacagacgcaccaatg
gtaaaagaggaggttcaggttaagttagaaggagaatcacaaaccagtgcaattattttc
taa
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