Carassius gibelio (silver crucian carp): 128024754
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Entry
128024754 CDS
T08819
Name
(RefSeq) THO complex subunit 1-like
KO
K12878
THO complex subunit 1
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03013
Nucleocytoplasmic transport
cgib03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128024754
09122 Translation
03013 Nucleocytoplasmic transport
128024754
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
128024754
03041 Spliceosome [BR:
cgib03041
]
128024754
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
128024754
Spliceosome [BR:
cgib03041
]
Complex C
Other components
EJC/TREX
128024754
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
128024754
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
SAM_KSR1
Motif
Other DBs
NCBI-GeneID:
128024754
NCBI-ProteinID:
XP_052466701
LinkDB
All DBs
Position
A2:5372609..5379433
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AA seq
655 aa
AA seq
DB search
MSPPSHFDFTEARDTFTAATKSAVDIRNCKPLTSAFSHLPGNETEKKATLDQALRGVLEE
QIVKQKANVEDFLSLIYISIDGVTEGVCSASTPFLLLGDVLDCLPLDQCDKIFSFVEENV
STWKSSTFYSAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQ
FNLDNITVFNKNEQESTLGLQHTEVKEEGMDVEEGEMGDEDAPAPCTIPIDYNLYRKFWT
LQDYFRNPVQCYDKFSWMTFLKYSDETLAVFKSFKLDDMQASKRKLEEMRTAAGDHVYFA
KFLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSSCVLNDDQSLWIEDTTKL
VYQLVKETPPDGDKFASMVEHILNTEENWNSWKNEGCPSFVKERPAETKPIRPSRKRPAP
EDFLGKGPDRKIHMGNEELTRLWNLNPDNMEACKSDSREFMPSLEEFFVEAIEQADPTNM
VEDEYKVVRNSNYGWRALRLLSRRSPHFFQPTNQQFKSLADYLENMVIKLAKELPKDLPS
EEIKTGEEDDDENGDNLLKDSNDSPSIQSKAVTNSQMDEIAAKLGSKWKTLADHLEMSEK
EIRMIESDSEDVELQAKMLLVAWQDREGPQATMESLVLALNAAGFSNVTEGLSET
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atgtctcctccgtctcacttcgacttcactgaagccagagatacattcacggctgccact
aaaagtgctgtggatatcaggaactgtaaacccctgaccagtgctttcagccatctgcct
ggaaatgaaactgagaagaaagccactcttgatcaagccctgcgaggagttctcgaggag
cagatcgtgaagcagaaagcaaacgttgaagatttcctttctctgatctacatcagtata
gacggcgtgactgaaggcgtctgctccgccagcactccttttcttctgctgggagatgtt
ctcgactgtcttcctctggaccagtgcgacaaaatcttctcctttgttgaagaaaatgtc
tctacgtggaaatctagtacattttactctgctggtaaaaattacttgttaagaatgtgc
aatgatctcctccggagactctccaagtctcagaacacagtgttttgtggacgaatccag
ctgtttctagcacgtctctttcctttgtctgaaaaatcaggcctgaacttacagagtcag
ttcaaccttgataacatcaccgtgttcaataagaatgagcaggagagcacactcggactg
cagcacaccgaggttaaagaagaggggatggacgtggaggagggagagatgggtgatgaa
gatgcacctgctccctgcaccattcctattgactacaacttgtacagaaaattctggacc
ctgcaggactatttcagaaaccctgtacagtgctacgacaagttctcatggatgactttc
ctgaagtactcagacgagacgctagctgtgttcaagagcttcaagctggatgacatgcag
gcctcaaagagaaagctggaggagatgaggactgctgctggagaccacgtctactttgcc
aagttcctcaccagtgagaaattgatggaccttcagctcagtgacagcaacttcagacga
cacatcctgctccagtatctcatcctcttccagtatctcaagggccaggtcaagttcaag
agctccagctgtgttttgaatgacgatcaatctttgtggattgaagacacaaccaaacta
gtctatcagttagtgaaagaaacccctccagatggagacaagtttgcgtctatggttgag
cacatcctgaacacagaagaaaactggaactcttggaaaaatgaaggctgtccgagcttt
gtgaaagaaagaccagcagaaaccaaacctatccgtcccagcagaaagagaccagcacca
gaggactttttggggaagggcccagatcgcaagatccacatgggaaatgaggagctcacg
aggctctggaatctaaacccggacaacatggaggcctgcaagtcagatagcagggagttc
atgccgtcactggaggagttttttgtagaagccatcgagcaggcagatccaaccaacatg
gtggaggatgagtacaaagttgtgcgtaactcaaactacggctggcgagccttgcgactg
ctgtccaggaggagtccgcacttcttccagcccaccaaccagcagttcaagagtctggca
gactatctggagaacatggtcatcaaactggccaaagagcttcctaaggaccttccttct
gaggagataaaaacaggagaggaggatgatgatgagaatggagataacctgttaaaagac
agcaatgacagtcccagcattcagagcaaggcagtgaccaacagtcagatggatgagatc
gcggccaagcttgggtccaagtggaagacgctggctgaccacctggagatgagcgagaag
gagatccgcatgatcgagtctgacagcgaggatgtagagctgcaggccaagatgctgctg
gtggcctggcaggaccgagaaggccctcaagccacgatggagagcctggtcttggctctg
aacgcggccggtttcagtaacgtcacagaaggtctcagcgaaacatga
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