Carassius gibelio (silver crucian carp): 128028831
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Entry
128028831 CDS
T08819
Name
(RefSeq) collagen alpha-4(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib04510
Focal adhesion
cgib04512
ECM-receptor interaction
cgib04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128028831
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128028831
09142 Cell motility
04820 Cytoskeleton in muscle cells
128028831
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cgib04147
]
128028831
00536 Glycosaminoglycan binding proteins [BR:
cgib00536
]
128028831
Exosome [BR:
cgib04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
128028831
Glycosaminoglycan binding proteins [BR:
cgib00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128028831
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
128028831
NCBI-ProteinID:
XP_052472121
LinkDB
All DBs
Position
A15:complement(4095567..4121478)
Genome browser
AA seq
1615 aa
AA seq
DB search
MSRPHRNASTSHLFFRRLLFALMTIHTALGGDKTERCDGRDCSVCQCFPHKGERGNPGVL
GQQGPQGPRGLPGPRGLNGEKGRSGPVGLPGVSGPKGDQGFQGEKGHAALDGVPGHPGPG
GPPGFPGKDGCNGARGKLGLNGEIGRPGLPGAKGLPGLKGAKGDTSTSLTFIPGTPGDDG
LSGISGPHGDPGRLLPGPKGDEGDHGPQGEPGPFEYVEPNPEDCVKGDKGKKGPRGICGV
PGPEGCEGPPGEEGQKGIIGLSGPRGPCGDIGLPGLCGIQGPKGCSGDPGPKGNPECYYN
HVIGPPGDRGLPCAAGLPGDRGMPGIPGPPGDSGACITGPEGECGLPGLNGLKGEKGDPG
NLCGSLLNGEPGKPGCPGPKGQCGNPGNSGYYCLTGERGETGQGGYRGPPGLKGVQGRKG
PDGGCACDPLGDLPGDPGPPGPPGVPGCPGKTGCQGPPGDVGPTGKMGLRGVAGPRGFIG
VRGAKGEKGDVMMMCRKGDKGDEGSVGSCGKPGCSGREGADGKIGAPGDPGPMGDCIVGP
PGDRGCPGAAGVRGVRGPAGLPGPNMMGSVGRRGQQGCQGPQGQTGPPGPKGVQGDTLPC
GPGIRGAPGCKGMPGCKGEKGKLGNPGCIGQNGPCGPKGEIGDPGDCRVTGLTGPVGCSG
DPGDTGPDGQSVCGSPGTPGNRGCQGLKGCSGDCITGAPGPKGPSGIQGCQGPKGVPGPT
GPNGLQGACGVPGFPGRKGENGIDGTPGAPGCPGGRPEHCDKGQAGPPGNTGPPGFTGPR
GCPGEKGSPGEPGSSCIGAKGQCGMLGTPGNQGCAGLQGPPGFEGDCGNPGCPGPKGLPG
CPGQDGCPGNKGRTGPLGPPGPKGIRGFSGYPGCPGVNGTKGQKGCIGPPGPLGDITPVL
LKGQVGPPGPGGENGFCGERGNKGDPGPPGQPGCAGRNGPPGSECGQCGPAGIPGLCGVP
GARGQRGPKGIVGFPGDNGDQGDPGSCGLPGTPGFPGFDGPKGDKGESICEPGLIGEIGP
CGDRGVSAPPGGEGDCGDPGPQGPRGCSGPPGPPGNNGLTGPPGVVGPPGPCGRHGPEGP
PGCPGPPGPKGNPGRIGLRGPPGPPGLHGLDGLEGYNGEKGCRGQGINGCRGNKGLTGDK
GTPGDPGLRGPSQTGVRGPNGKCGCQGDPGPMGPPGCRGPECKTPKHGPCGERGCAGPDG
PPGPKGEQGEAGCVFTVNGDCGDPGCKGDPGCKGERGSCGLSGLPGCEGLKGPKGERGQC
GLMGLPGLPGTRGDCGPRGLCGPKGDIGDPGLKGDPGTVIIPPTPCPLLPGPPGAPGAPG
PVGEAGEHGPNGTEGPNGIKGQKGDSGISGPTGPEGPQGLSGNPGEIGEKGAKGSQGPQG
SVGDEGPPGPSSSGFLLVIHSQSEIVPTCPSGLAELWNGYSLLYLEAQERAHIQDLGQAG
SCLRMFSTLPFSCCNMNGCDYASRNDKSYWLSTNASIPSNSTLRGMEIQPHISRCVVCEV
SSPAITLHSQDGNTPECPFNWRTLWVGYSFLMHTGSGDEGGGPSLASTGSCLQEFHSQPF
VECQGPLGTCQYSPTFYSFWLTRVNMEPFNSVPYSTVLTEENQLDSISTCSVCVT
NT seq
4848 nt
NT seq
+upstream
nt +downstream
nt
atgtcacgtccccaccggaatgcctccaccagccaccttttcttcaggaggcttttattt
gcacttatgaccatacacacagcattggggggagacaagacagaaaggtgcgacggtcga
gactgcagcgtctgccagtgtttcccccacaaaggagagagggggaatcctggtgtgtta
ggtcagcagggcccacaggggcctcggggtttgcctggcccccgaggacttaatggtgaa
aagggtcgaagtggacccgtaggattgcctggggtctccggcccgaaaggagaccaggga
tttcaaggagaaaaaggccatgctgcattagatggagtgcctggtcatccagggcctggt
ggtcctcctgggtttccagggaaggatggctgtaacggagccagagggaaattagggttg
aatggtgagataggacgacccgggctcccaggagccaagggactacctgggttaaaagga
gccaaaggagacacgtctacaagtttaactttcattcctggtacacctggtgatgatgga
ctttctggaatctctggaccacacggagacccaggaaggttactaccaggaccgaaagga
gatgagggcgaccacggtcctcagggtgaaccaggtccatttgaatatgtggagcctaac
ccagaagactgtgtaaaaggcgataaggggaaaaagggaccgagaggaatttgtggggta
cctgggccagagggttgtgaagggccgccgggagaagaaggacagaaaggcataattggg
ctctctggtcccagaggtccatgtggggatattggtcttcctggtctatgtggcatccaa
gggccaaagggctgctcaggtgaccccggacctaaaggaaacccagagtgctattacaac
catgtgataggaccacctggagatcgtgggcttccttgtgcagcgggacttcctggggat
agagggatgccgggtatacctggaccccctggtgattcaggagcatgtataacaggtcca
gagggtgaatgtggtctgccaggtcttaatggactgaaaggagaaaaaggtgacccagga
aacctatgcgggtcactcttaaatggggaacctggaaaaccgggctgccctggacccaaa
ggacaatgtggaaatcctgggaattctggttactactgcctgactggtgaacgtggagaa
actggacagggtggatatagagggcctcctggattaaaaggtgttcagggaagaaaaggt
cctgatgggggatgtgcatgtgacccacttggtgatttaccaggagatccgggccctcca
gggcctcctggtgtccctggttgtcctgggaaaacaggctgtcagggtcctcctggcgat
gttggacccactggaaagatgggtttgagaggtgtagctggtcccagaggcttcataggt
gtcagaggggctaaaggagagaaaggagatgtgatgatgatgtgcagaaagggggataaa
ggtgatgaaggatctgttggatcatgtggaaaaccaggatgtagtgggagggaaggagct
gatgggaagattggtgcccctggagatcctggacctatgggagattgtattgttggtcca
ccgggtgacagggggtgtccaggggctgctggtgtgaggggtgtaagaggtccagctggt
cttcctggcccgaatatgatggggtcagttgggcgacgggggcaacaagggtgccaagga
cctcaaggccagacgggacctcctggtcctaaaggcgttcaaggtgatacactgccctgt
ggacctggcatacgtggagcccctggttgcaaagggatgcctggttgtaaaggtgagaaa
ggtaagcttggaaatccaggatgcatcggacagaatggaccatgtggtcccaagggagag
attggagaccctggtgactgtagggtaacaggtcttacaggtccagttggatgttcagga
gatcctggtgacactggcccagatggccagagtgtttgtggctctcctggcacacctggc
aatcgtggatgccagggtctgaaagggtgttctggcgactgtattacaggggctccagga
ccgaaagggccctctggaattcagggatgtcagggccctaaaggtgtccctggacctact
ggaccaaatggattgcaaggtgcatgtggagttcctggttttcctggtagaaaaggggaa
aacggaatagatggtacaccaggagcccctggttgcccaggtgggagaccagagcactgt
gacaaaggacaagctggtccacctggtaatacaggaccaccaggcttcactggaccaaga
gggtgccctggagagaaaggatcgcccggggagccaggatcttcatgcattggagccaaa
ggacaatgtggtatgcttggtaccccgggcaatcaaggatgtgcaggccttcagggacct
ccaggattcgaaggggactgtggaaaccctggatgccctggaccaaagggtttgcctgga
tgtcctggtcaagatggctgtcctggtaacaaagggaggactggccctttagggcctcct
ggaccgaaaggcatcaggggtttcagtggatatccaggttgcccaggggtaaacggaacc
aagggccagaaaggatgcattggacctccaggacctctgggagacataactccagtgcta
ttgaaaggccaggtagggccacctggacctggtggagagaatggtttctgtggagaaagg
ggtaataagggggacccaggtccacctggacaacctgggtgtgcgggacgtaatggacct
cctgggtctgaatgtggccagtgtggaccggcaggcattcctgggctgtgcggtgtgcct
ggtgcacgtgggcagcgtgggccaaagggaattgtgggatttccaggtgataatggtgat
cagggtgatcctggatcgtgtggtctgccaggaacccctggtttccctgggtttgatggt
cctaaaggtgacaaaggtgaatctatttgtgagccaggactaataggtgagatagggcca
tgtggagacagaggcgtgtcagctcctcctggtggtgaaggagactgcggtgaccctggc
ccacaagggcctaggggatgctctggtccacctggaccacctggaaacaatggcctgact
ggacctccaggagtcgttgggcccccaggtccttgtggaagacatggtccagaaggtccc
cctggatgtccaggtcccccgggccctaagggaaacccaggaaggattggccttagagga
cctccggggcccccaggactccatggactggacggcctggaggggtacaacggtgaaaag
gggtgtcgaggacagggtataaacggttgtaggggcaataaagggctgaccggagacaag
ggcactccaggagacccagggttgcgaggcccatcacaaacaggtgttcgaggtcccaat
ggaaagtgtgggtgccaaggagaccctggtccaatgggtcctccaggctgtcgtggtcca
gaatgtaagactcctaaacatggaccttgtggagaacggggttgtgctgggccagatgga
cctccagggcccaagggagagcaaggagaggcaggctgtgtgttcacagtgaacggggat
tgtggtgacccaggttgtaaaggagacccagggtgtaaaggagaaagaggatcgtgtggg
ctcagtggcctcccagggtgcgaaggactaaaaggtccaaaaggtgaaagaggacaatgt
ggacttatgggccttccaggactccctggcaccagaggcgattgtggcccccgaggactc
tgtggtccaaaaggagacataggggacccagggcttaaaggagaccctgggactgtcata
attccccctactccttgtccccttcttccgggtcctcctggtgctcctggtgcacctggc
ccggttggtgaagctggtgaacatggacctaatggtactgagggtccaaatggtattaag
ggacaaaaaggagattctgggatttctggacctactgggccagaaggaccacagggacta
tctggaaaccctggagagatcggcgagaaaggagcaaaaggatctcagggaccacaagga
tcagttggtgatgagggtcctcctggaccgtcttcctctggcttccttttggtgatacac
agccagtctgagattgtgcccacttgtccttcgggtctagcagagttatggaacggctac
agtctactatatctggaggctcaggaaagagcacacatacaagacctgggccaagcaggt
tcctgtttacgtatgttcagcacactaccattctcctgctgtaatatgaatggatgtgat
tatgccagccgcaacgacaaatcttattggctgtctacaaacgcctcaattccctcgaat
tccaccctgagggggatggaaattcaaccacacatcagcaggtgtgtggtgtgtgaggtg
tcatcgccagccattacattacacagtcaagacgggaatacaccagagtgtccattcaat
tggagaacactctgggtcggatattcatttcttatgcatacaggatcaggggacgaggga
gggggaccgtctctggcatcaacaggaagctgtttgcaggaattccacagtcagccgttt
gtggagtgccaaggtccgcttggcacgtgccaatattcccccaccttctacagtttctgg
ctgactagagtgaacatggagccctttaactctgttccttacagtactgttctcactgaa
gagaaccagctcgatagcatcagcacatgcagcgtctgcgtgacttaa
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