Colletes gigas: 122397080
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Entry
122397080 CDS
T07492
Name
(RefSeq) histone deacetylase HDAC1 isoform X1
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
cgig
Colletes gigas
Pathway
cgig03082
ATP-dependent chromatin remodeling
cgig03083
Polycomb repressive complex
cgig04213
Longevity regulating pathway - multiple species
cgig04330
Notch signaling pathway
cgig04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
cgig00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122397080
03083 Polycomb repressive complex
122397080
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
122397080
04350 TGF-beta signaling pathway
122397080
09150 Organismal Systems
09149 Aging
04213 Longevity regulating pathway - multiple species
122397080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cgig03036
]
122397080
Enzymes [BR:
cgig01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
122397080
Chromosome and associated proteins [BR:
cgig03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
122397080
HDAC complexes
Sin3A-HDAC complex
122397080
BRAF-HDAC complex
122397080
REST complex
122397080
SHIP complex
122397080
MiDAC complex
122397080
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
122397080
Heterochromatin formation proteins
Other heterochromatin formation proteins
122397080
Chromatin remodeling factors
NuRD complex
122397080
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
122397080
NCBI-ProteinID:
XP_043251880
LinkDB
All DBs
Position
Unknown
AA seq
492 aa
AA seq
DB search
MSTLPHSKKRVCYYYDSDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKAT
ADEMTKFHSDEYIRFLRSIRPDNMSEYNKQMQRFNVGEDCPVFDGLYEFCQLSAGGSVAA
AVKLNKQASEICINWGGGLHHAKKSEASGFCYVNDIVLGILELLKYHQRVLYIDIDVHHG
DGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNIPLRDGMDDESYESI
FVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKKYNLPFLMVGG
GGYTIRNVSRCWTYETSVALGSEIANELPYNDYFEYFGPDFKLHISPSNMANQNTPEYLE
KIKSRLFENLRMLPHAPGVQVQPIPEDGAVIEDSEAEEKVNPDERLPQRDLDKRIQHENE
YSDSEEEGEGGRRDNRSFKGSRKRPRLEKGQEGIESDLKKEEDIKSEPKENEKDEKANVI
NEETKKDGGANP
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacattaccacacagcaagaagcgcgtctgctactactacgacagtgatattgga
aattactactatggacaaggacatcctatgaaaccacatcgtataaggatgacacataat
ttacttctcaattatggtctttacagaaaaatggaaatatatcgacctcataaagctaca
gcagatgaaatgacaaaattccatagcgatgaatatattaggtttctcaggtccataagg
cctgacaatatgtcagagtataataaacaaatgcaacgatttaatgttggagaagattgt
cctgtttttgatggtttatatgaattttgtcaattgtcagctggaggctctgtagctgct
gctgtaaaacttaacaaacaagcctcggagatttgtataaattggggtggaggtttacat
catgccaaaaagagcgaggcatctggtttttgttatgtcaatgatattgtactaggaatc
ttggaactgcttaaatatcatcaaagagttttatatattgatattgatgttcatcatggc
gatggggtagaagaagctttttataccactgatagagtaatgacagtctccttccataag
tatggtgaatattttcctggtaccggcgatctccgtgatattggagcagggaagggaaaa
tattatgcggtcaacataccgctaagagatggtatggatgatgaaagttatgagtcaata
tttgtacctataatttcaaaagtgatggaaacctttcagccttctgctgttgttttacag
tgtggtgctgattcgttaacaggggatagattgggttgtttcaacttaacagtaagaggt
cacggtaaatgcgttgaatttgtaaaaaaatataatctacctttcttaatggttggcggt
ggcggatatactatcaggaacgtgtctagatgttggacatatgaaacatcggtagctctt
gggtcagaaattgcaaacgaattaccttacaatgattattttgaatattttggacccgat
tttaaattacatattagtccttcaaacatggcaaatcaaaatactcccgaatatcttgag
aaaattaagagcagattatttgagaacctacgaatgttacctcatgcaccaggtgtacaa
gttcaaccaattccagaagatggtgcggttatcgaagattcagaggctgaggaaaaggtc
aatccggatgaacgattaccgcaacgtgatttagataaaaggatacaacatgaaaatgaa
tatagtgacagtgaagaagaaggagaaggcggtcgaagagacaacaggtcatttaagggt
tccagaaaacgacctcgtctagaaaagggtcaagaaggcatagaaagtgatctcaaaaaa
gaagaagacataaaatcggaaccaaaagaaaatgagaaagacgaaaaagcaaatgtcatt
aacgaggaaacaaagaaggacggtggagcgaatccctga
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integrated database retrieval system
