Corynebacterium geronticis: CGERO_03775
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Entry
CGERO_03775 CDS
T06788
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cgk
Corynebacterium geronticis
Pathway
cgk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cgk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CGERO_03775 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cgk03400
]
CGERO_03775 (mfd)
Enzymes [BR:
cgk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CGERO_03775 (mfd)
DNA repair and recombination proteins [BR:
cgk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CGERO_03775 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
RecG_dom3_C
UB2H
DUF3638
Motif
Other DBs
NCBI-ProteinID:
AZA11073
UniProt:
A0A3G6IZX8
LinkDB
All DBs
Position
788466..792224
Genome browser
AA seq
1252 aa
AA seq
DB search
MAHGPAMLAGLLKVAATDPKLKGLCAHIDEPSLHITGLQQVRPWAVGALAHKAPMLVVTP
TGRDAEDLTAELKAMMGEQVAWFPAWETLPHERLSPAADVIGQRAKVLDHLDSLRVVVTA
ARGFCQPLLAKNPGREALRIVAEREYDFEQLQRDLVYRAYQHVDLVAKRGEFATRGGILD
IFPTTAEQPVRIEFWGDEVSEIREFSVADQRAFQGMTVDAVEIFPARELLITPEVAARAE
ELARQYQGNPTLQELLSSIAEGVPSPGMEALIPALVDTPMVSLPELMPVGTHVLVMDPER
IRRRIEDLKATDDEFLAAGWEAAAMGAAGPVAAEGLDLEASSYRSYESLEASARDRSMPW
WTFAPPGMFAADETQTLPLEFEAGPTPRGDLQQIEAMMSLLLAHTNAGGRAAFIAPAQGA
MKRMKERFAEQGIRAKVATPGWEPSPGEVTLYQALSHAGLIFPKVRKIAGAEALPLVVIT
ETDLTGNRVGDIAGAKRRPAKKRNRVDPLALKAGDYVVHETHGIGRFVTMTERTINTGGE
TSRREYIVLEYAPSKRGQPADQLYVPMDSLDMLSKYVGGEKPTLSKMGGSDWKNTKKKAR
AAVREIAGELVELYAKRQAAPGHAFAPDNPWQRELEDNFPFVETEDQMLAIDAVKEDMEK
SSPMDRVVVGDVGYGKTEVAVRAAFKAVQDGRQVAVLVPTTLLAQQHLSTFEERMAGFPV
TIKGLSRFSSSAEAKETLKGLADGSVDIVIGTHRLLQTGVQWKNLGLVVVDEEQRFGVEH
KEHIKALRSHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPQDRHPILTYVGAYEEKQV
AAAIRRELLRDGQVFFVHNKVADIEKRARELRDLVPEARIVVAHGQMGEEQLEQTVQGFW
NREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPK
GQTLTETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAEQSGHIAGVGFDLYVRL
VGEAVEAYRAMADGKVIDASDQGPKEIRIDLPVDAHIPDDYIAAERLRLEVYRKLASASN
NAEIQGVIEEMEDRYGQVPEPVSRLLAVARLRLLARSAGISDIGVQGTRIKVHPVVLADS
QQVRLKRLAPSAAYRAAAKAIQLSMPKEGPNVTDKQLRDVALLQWVADFIAAMFNVDRVS
VSGEELGESLVVAGASRAQATPAPKRARRVVSSDDFDEEERREARRKKFRLR
NT seq
3759 nt
NT seq
+upstream
nt +downstream
nt
gtggcacacggccctgcaatgctcgccggcctgctcaaagtggcggccaccgaccccaag
ctcaaaggtctctgcgctcatatcgatgagccgtcgttgcacatcaccgggctgcaacag
gtgcgcccttgggcggtcggagctttggcgcacaaggcgcccatgctggtggtgacgcca
actgggcgtgacgctgaggacctcaccgcggagctgaaggcgatgatgggcgagcaagtg
gcgtggttccccgcctgggagacattgccacacgagcgcctcagccctgcagcggatgtg
attggtcagcgggcgaaagttctggatcatcttgattcgctgcgtgttgtggtgaccgcc
gcccgtggtttttgccagccgctgttggcgaagaatcctggccgagaagcactgcggatt
gttgcggagcgggaatatgacttcgaacagttgcagcgagatctggtgtaccgcgcgtat
cagcacgtggatttggtggccaagcgcggcgagtttgctacacgcggtggcatccttgac
attttcccaaccaccgctgaacagccagtccgcatcgaattctggggtgacgaggtcagc
gagatccgcgaattttccgtggcggatcagcgtgctttccaaggcatgacggtggatgcc
gttgagatattcccggctagggagctgctcatcactcccgaggtcgccgctcgggcagag
gaattagcccgccaataccaaggcaaccccacattgcaggaacttttgagcagcatcgcc
gagggggtgccctccccaggcatggaggcgctcattccagcattagtggacacgccgatg
gtgtcattgccggagctgatgccagtaggcacccacgtgctcgtgatggatcccgaacgt
attcgacgtcgtattgaagacctcaaggccacagacgatgagttcctcgcggccggttgg
gaagcggcagcgatgggagctgcgggcccggtggcggcggaaggcctggaccttgaagcc
agctcctaccgctcctatgaatctctggaggccagcgcccgcgatcgttccatgccgtgg
tggacgttcgcgcctcctggcatgtttgcagccgacgagacccaaaccctgcccctcgag
tttgaggcagggccaacgccgcgcggtgatctgcagcagattgaagcgatgatgtcgttg
ttattggcacacacgaatgccggtggacgtgctgctttcatcgctcccgcacaaggagcg
atgaagcgcatgaaagagcgctttgctgaacaggggatccgagccaaagttgcaaccccg
ggatgggagccgagcccaggcgaagtcacgctctatcaggcgcttagccacgccgggctc
atctttccgaaggtgcgcaagatcgccggtgccgaggcactgccactcgtggtcatcact
gaaacagacctcaccggtaatcgcgtcggagacatcgcgggtgccaagcgccgcccagca
aagaaacgaaaccgggtggaccccttggcgcttaaagcgggtgattacgtggtgcacgaa
acccacggcatcggtcgctttgtcacgatgaccgagcgcaccatcaataccggtggtgag
accagccgacgcgagtacatcgtgcttgaatacgcgccatctaagcgcggccagcctgcg
gaccagctctatgtgcccatggattccttggacatgctgagcaagtatgtgggcggggag
aagcccaccttgtccaaaatgggcggctccgactggaagaacacaaaaaagaaggcgcgc
gccgcagttcgtgaaatcgctggcgaactggtcgagctctacgccaaacgtcaggccgcc
cccggtcacgcttttgccccggacaatccttggcagcgcgaattggaagataacttcccc
ttcgtggagaccgaagaccagatgctcgccatcgatgccgtgaaagaggatatggagaag
tcctcgcccatggaccgcgtggtggttggcgatgtcggctacggtaagactgaggttgcc
gtgcgtgcggcgttcaaagctgtgcaggatggccgccaagtggccgtcctcgttcccacg
accttgctggcgcaacagcacctcagcaccttcgaagaacgtatggccggattccccgtc
accatcaagggcctaagccgcttcagttcctccgccgaggcgaaagaaacgctcaagggg
cttgccgacggcagcgtagacatcgtcatcggcactcatcgcttgctgcagaccggcgtg
cagtggaaaaacctcggcctcgttgtggttgatgaggagcagcgcttcggtgtggagcac
aaggagcacattaaggcgctgcgaagccacgtggatgtgctcaccatgtctgctacaccc
atccccaggacactggagatgtcgatggcgggtatccgagaaatgtctacaattctcacc
ccgccccaggaccgccatccgattctgacctatgtaggcgcctatgaggaaaagcaggtg
gccgcagctattcggcgcgaactgttgcgagatggccaggtgttcttcgtgcataacaag
gtcgcagacattgagaagcgtgcccgcgagctgcgcgatcttgtgccggaggcacgaatt
gtagttgcacacggacagatgggcgaggaacagctcgaacaaactgtgcagggcttttgg
aatcgcgaatacgacgtcctcgtgtgtaccaccattgtggagaccggcctggacatcgcc
aacgccaacaccttgatcgtggaaaatgcgcatcacatgggtctttcgcaactgcaccaa
ttgcgtgggcgcgttgggcgttcacgcgagcgtggctacgcctacttcctgtatcccaag
ggacaaacactcaccgagacctcctacgatcgcctcgccactatcgcccaaaacaatgac
ctgggcgcgggcatggcggtggccatgaaggatctggaaatgcgtggtgctggcaatgtg
ttgggagctgagcagtcaggacatatcgctggagttggctttgatctctacgtgcgcctc
gtcggcgaagctgtggaggcatatcgtgccatggcagacggcaaggtcatcgacgccagt
gaccaaggaccgaaggaaatccgtatcgacttgcccgtggatgctcacatcccggatgac
tatatcgccgccgaaaggcttcgcctcgaggtgtatcgaaagctcgcatcggctagcaac
aatgccgagatccaaggcgtgatcgaggagatggaagatcgttacggccaggttcccgag
ccggtatcgcgccttctagccgtcgctcgacttcgcctgctggcacgctccgcggggatt
agcgacatcggtgttcaaggcacacgaatcaaagtgcatcctgtggtgctcgcagattcc
cagcaggtgcgcctgaagcgcctggccccgagcgcagcgtatcgagctgcggcgaaagcg
atccagctcagcatgcccaaagaaggccccaacgtgacggacaagcagcttcgcgacgtc
gcgctgttgcaatgggtagcagacttcatcgccgcaatgttcaacgttgatcgggtcagc
gtcagcggtgaggagctgggtgaatcgctggtggtcgctggtgcttctcgagctcaggcc
acgcctgcccctaagcgcgcccgacgtgtagtcagcagtgatgacttcgatgaagaggag
cgccgagaagcgcggcggaaaaagttccgcctgcgctag
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