Chryseobacterium gleum: NCTC11432_02809
Help
Entry
NCTC11432_02809 CDS
T07042
Name
(GenBank) Putative DNA ligase-like protein Rv0938/MT0965
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cgle
Chryseobacterium gleum
Pathway
cgle03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cgle00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NCTC11432_02809
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cgle03400
]
NCTC11432_02809
Enzymes [BR:
cgle01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NCTC11432_02809
DNA repair and recombination proteins [BR:
cgle03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NCTC11432_02809
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
VEE08693
UniProt:
A0A448B3U7
LinkDB
All DBs
Position
1:2969774..2971645
Genome browser
AA seq
623 aa
AA seq
DB search
MLAKLSEDAFNDKDWIFEIKWDGYRAIADLSHESPLFYSRNGISFLTKFDKIVQDFDKQK
YQMILDGEVVAYDEQGKPNFQLLQQIGDNPGTPLVYQVFDLLWLNGHSTEELPLIQRKEL
LKEALIETDTIKYCDHIPEKGIEFFKQMKKMQLEGMIAKRADSLYIENHRTSDWLKIKFS
NTEEVIICGFTEPRGSRESFGALILGRYIHQKLTYCGHTGTGFNKTSLKELYQRLEKLIV
KSSPFEKIPNTNMPVTWIKPELVCEIKYSEITRDGIFRHPVFITVREDKGPEDIKESPFT
EKPKEMKTKTSSKKTENSEKEKEITLDKHKVKLTNQDKIYFPKDGITKGDVIDYYQSVAT
YILPYLKNRPLSLNRFPNGIEEQGFYQKDAGDTIPDWIKTTQVYSESNDKYIDYIYCNDK
ATLAYLNNLGCIDMNPWNSSLPDLEHPDYLVLDLDPSKKNTFDDVIETALQVNEVLKSIK
IKGYCKTSGSTGIHVYIPMGGKYDFDQVKDFAHILMKQVNEKLPELTTLERSLQKRDNKK
IYLDYLQNRTGQTLASAYSLRPKQGASVSMPLDWDELKPGVKPTDFNIDNALERIKEKGD
LFKPVLGKGIDMMKALEALQNID
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgctggccaaactttccgaagatgctttcaacgataaagactggatatttgaaataaaa
tgggacggctacagagccattgcggacctcagccatgaaagcccactcttctattcccga
aacgggatttcatttttaacaaaatttgacaaaattgttcaggatttcgataagcaaaaa
tatcagatgattctggatggcgaagttgtcgcctatgacgaacaggggaaacccaacttc
cagcttctacagcaaatcggggataatccaggcactccacttgtttaccaggtttttgac
cttctctggctgaacggccattctactgaagaacttccgctcattcagcgcaaagaactt
ttaaaagaagctttaattgaaactgataccattaaatattgtgatcatattcctgaaaaa
ggtattgaatttttcaaacaaatgaaaaaaatgcagctggaaggtatgattgcaaagcgg
gcagacagtttatatattgaaaaccacagaaccagtgactggcttaaaataaaattttca
aatactgaagaagtaattatttgtggttttacagaaccgagaggatcacgtgaaagtttc
ggggcattgatactggggagatatattcatcaaaaacttacctattgcggccatacaggt
acaggatttaataaaacgtctttaaaggaactttatcaaagacttgagaaattaattgta
aaatcctcccctttcgaaaaaattcctaacacgaatatgcctgtaacgtggataaagccg
gaactggtatgcgaaatcaaatactctgaaattacccgggacggaatattcagacatcct
gtttttataaccgtcagagaggacaaaggaccagaagatatcaaggaatcacccttcacc
gaaaaacctaaagaaatgaagacaaaaacatcatctaaaaaaactgaaaattctgagaaa
gaaaaggagatcacactagataagcataaagttaaactgaccaatcaggataagatctat
tttcctaaagatggcattacaaagggagatgttattgactattaccagtctgtggcgact
tatattttaccttatctgaagaaccgccctctttctctgaaccgttttcccaatggaatt
gaagaacagggcttttatcagaaagatgcaggagacaccataccggactggataaaaacc
acgcaggtatattctgaatcgaatgacaaatacatcgactacatttactgtaatgataaa
gcaaccttagcctatctgaataatttaggatgtattgatatgaatccgtggaacagttca
cttcctgatcttgaacatcctgattaccttgttttggatcttgatccgtcaaaaaagaat
acatttgatgatgtgattgaaacagcgcttcaggtgaatgaagttttaaaatcgattaaa
ataaaaggctattgcaaaacctcaggcagcaccggcattcacgtttatattccgatgggt
ggtaaatatgattttgaccaggtaaaagacttcgcccatattctgatgaaacaggtaaat
gaaaaacttcctgaactcaccactttagagagaagccttcagaaaagagataacaaaaaa
atttatcttgattacctgcagaacagaaccgggcaaaccctggcaagtgcatacagctta
agacctaaacagggagcttcagtttctatgcctctggattgggatgaattaaaaccagga
gtgaagcctacggattttaatattgataacgctcttgaaaggattaaagaaaagggtgat
ttgttcaagccggttttaggtaagggaattgatatgatgaaggctttggaggcgctgcag
aatatagattaa
DBGET
integrated database retrieval system
