Chryseobacterium gleum: NCTC11432_03636
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Entry
NCTC11432_03636 CDS
T07042
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cgle
Chryseobacterium gleum
Pathway
cgle03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cgle00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NCTC11432_03636 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cgle03400
]
NCTC11432_03636 (mfd)
Enzymes [BR:
cgle01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCTC11432_03636 (mfd)
DNA repair and recombination proteins [BR:
cgle03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NCTC11432_03636 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
SBP_bac_3
Choline_kin_N
Latarcin
Motif
Other DBs
NCBI-ProteinID:
VEE10061
UniProt:
A0A448B6E7
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All DBs
Position
1:3875416..3878784
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AA seq
1122 aa
AA seq
DB search
MQLKSINEKFLPDLLQKEFGKEIFTKLENNQHIAVKGSAGSSVSIFVAELFLVQKKNILY
LVDDKEDALYANTEMEDLLGKDKVLYFPATHLEPYQVEKTQNANLVLRTEVLNKINSGRS
PKVIVAYAGALSEKVLKKEDFKAISHHIKVGDQLDFDFVDELLNHYHFQQADFVSEPGEF
SVRGGIVDVFSYSHEKPYRITFFGNEVESIKTFDIETQLSVDKVKDFQLVSNMNFSVTGT
RVSLLQLLPHESFVVSKNGMVGMQKIRTFYEKSLEKYDTLSKDIAHRTPQELFISDQEFL
FDYKKFKTVDFGGVVIEGLKEVTEVKMDQLPQPSFHKNFELLIEDIEEKQNNGFDTWISF
STEKQKERLESIFEELEHELPFKSFKSELHEGFVDNGHKLMVYTDHQIFDRYQRYKAKNT
FAKSEQLTLKDLMSLKIGDYIAHIDHGIGKFMGLVKVNNDGKIQECFKLTYKNGDLLYVS
IHSLHKISKYNGPDGREVVLSKLGSPTWKSLKQKTKAKVKQIAFDLIKLYAQRKTAKGFA
YTPDSYLQNELEASFIYEDTPDQEKATIDVKRDMEADTVMDRLVCGDVGFGKTEVAIRAA
FKAATDGKQVAVLVPTTILAFQHYRSFKERLKDFPVNVAYVNRFRTAKQKSETLEALKNG
KVDIIIGTHQLVSSSVKFKDLGLLIIDEEHKFGVSVKDKLKTLKNNVDTLTLTATPIPRT
LQFSLMAARDLSVIKTPPPNRQPVETQLIGFNEETLRDAVSYELQRDGQVYFINNRIENL
KDIAGLIQRLVPDARVITGHGQMEGKQLEKNVLDFMEGKYDVLVSTTIVESGVDVPNANT
IFINDAQRFGMADLHQMRGRVGRSNRKAFCYLITPPYDMMTSDARKRLEAIEQFSDLGSG
FQIAMKDLEIRGAGDLLGAEQSGFINEMGFETYQKLMQEALEELKDDADFENLFENEEDR
QKLFKSVKDVNIDTDLELMLPDSYISNTEERLLLYQKIAEINNEADLHQFELELIDRFGP
LPKEAINLLKSVSLKWLAAEIGFEKIVMKNGVFLGYFPGNPQDKFYQTDRFRHIINYLTR
NPAEAQLKEKSGKEGNQLMMRKEKVKNVDEVNLLLKAIIEHN
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgcagttaaaatccatcaatgaaaagttccttccagaccttttacagaaagaatttgga
aaagaaatttttaccaagctagaaaataatcagcatattgccgtaaaaggaagtgccgga
tcttcggtttctatttttgtggctgagctctttttggtccagaagaaaaatattctttat
ctggtagatgataaggaggatgctttgtatgccaatacggagatggaggatcttttgggt
aaagataaagtgttatactttccggcaacccatcttgaaccttaccaggtagaaaaaaca
cagaatgccaatctggttttaagaactgaggttttaaataaaatcaattccgggaggtct
cccaaagtgattgttgcctatgctggagccttatctgaaaaggttttgaaaaaggaagat
tttaaagcaatatcccatcatattaaagtgggtgatcagctggattttgattttgtggat
gaactgcttaatcattatcatttccagcaggctgattttgtttctgaaccgggagaattt
tctgtaagaggcggtattgtggatgtcttttcctattcgcatgaaaagccgtataggatt
acgttcttcggtaatgaagtggaaagcatcaaaacttttgatattgaaacacagctttct
gtagataaagtaaaggatttccaattggtttccaatatgaacttttcagtgacaggaaca
agggtgtctttgctgcaattattgcctcatgaaagctttgttgtttctaaaaacggcatg
gtaggaatgcagaagatcagaacattctatgaaaagtccctggaaaagtatgatacactg
agtaaagatatcgctcacagaactccgcaggaactttttatttctgaccaggagttttta
tttgattataaaaaattcaaaacagttgattttggaggagtggtgattgaagggctgaaa
gaagttactgaagtaaaaatggatcagcttccacaaccatcttttcataaaaactttgag
ttattgattgaagatattgaggaaaagcagaacaatggattcgatacctggatttccttt
tcaacagaaaaacagaaagaaagactggaatctatttttgaagaacttgagcatgagctt
ccttttaaaagttttaaatctgaacttcatgaaggatttgtagataacggacataaactg
atggtttatacggatcaccagatctttgaccgttaccagaggtacaaagctaaaaatact
tttgccaaatctgaacagctcactctgaaggatctgatgtctctgaaaatcggagattat
atcgcccatatcgatcatgggatcggaaaatttatgggtttggtaaaagtgaacaatgac
gggaaaatccaggaatgttttaaactgacctataaaaacggagacttattgtatgtaagt
attcactctttacataaaatttcgaagtacaacggaccagatggaagagaggttgtactg
agcaagcttggatctccaacctggaaatccttaaagcagaaaacgaaagcgaaggttaag
cagattgcttttgaccttattaaattatatgctcagagaaaaacggccaaaggttttgca
tatacaccggattcttatctgcagaacgagctggaagcgagctttatttacgaagatacg
ccggatcaggaaaaagcgactatcgatgtaaaaagagatatggaggctgatacggtgatg
gacaggcttgtttgtggggatgttggtttcggaaaaacggaagtagcaatacgggcagca
tttaaagcggctacggatggcaagcaggtagcagtgttggtgcctacaactattctggct
ttccagcattacagaagctttaaagaaaggctaaaagattttccggtaaatgttgcttat
gtcaacagattcagaacggcgaagcagaaatcagagactttggaagcactgaagaatggg
aaggtagacattattattggtacgcatcaattggtaagcagttctgttaaatttaaagat
cttggattgctgattattgatgaagagcacaaattcggggtatcagtaaaagataaactg
aaaactttaaagaataatgttgatactcttacgcttacggcaactcctattccgagaacc
ttacagttttcattaatggcggcaagagatttatctgttatcaaaacgccaccaccaaac
aggcagcctgtagagacacaactgatcggattcaatgaagaaacccttcgtgatgctgtt
tcttatgaactacagagagatggacaggtgtattttattaataacaggattgaaaacctt
aaagatattgctggtcttatccagaggttggttccggatgcaagagtgattacaggacac
ggacagatggaagggaaacagcttgaaaaaaatgtcctggattttatggaaggaaaatat
gacgtccttgtatctaccaccattgtagaaagtggagtagatgtacccaatgccaatact
attttcatcaatgatgcgcagagattcggtatggcagacctgcaccagatgagaggaagg
gtagggcgaagcaacagaaaggctttctgctacctgattactcctccttatgatatgatg
acttccgatgcgaggaaacgtctggaagcgatagagcagttttctgatcttggaagtggt
ttccagattgcaatgaaagaccttgaaatccgtggagccggtgatcttctgggggctgag
cagagtggttttatcaacgaaatgggatttgaaacgtatcagaagttaatgcaggaagca
ttggaagagttaaaagatgatgctgattttgaaaacctgtttgaaaatgaagaagacagg
cagaagcttttcaaatctgtgaaggatgtcaatatcgatacagatttagagttgatgctg
ccggattcatatatatccaatacggaagaaaggctgttattatatcagaaaattgccgag
atcaataatgaggcggatcttcatcagtttgagctggagttgattgaccgtttcggacca
ttgcctaaagaagcaataaatctgttgaagagtgtttccctgaaatggcttgcggcagag
atcggttttgaaaaaattgttatgaaaaacggtgtctttttagggtactttccgggaaat
cctcaggacaagttttatcagacagacagattcaggcatattattaattatctgaccaga
aaccctgctgaagctcagctgaaagaaaagtcaggaaaagaaggcaatcagctgatgatg
aggaaggaaaaggttaaaaatgtagatgaggtaaatctactgttgaaagctatcattgag
cataattaa
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