Corynebacterium glucuronolyticum: I6J20_05680
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Entry
I6J20_05680 CDS
T07375
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cglu
Corynebacterium glucuronolyticum
Pathway
cglu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cglu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
I6J20_05680 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cglu03400
]
I6J20_05680 (mfd)
Enzymes [BR:
cglu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
I6J20_05680 (mfd)
DNA repair and recombination proteins [BR:
cglu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
I6J20_05680 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
RecG_dom3_C
IstB_IS21
AAA_30
DUF1474
Motif
Other DBs
NCBI-ProteinID:
QRO83596
LinkDB
All DBs
Position
complement(1323672..1327328)
Genome browser
AA seq
1218 aa
AA seq
DB search
MPTLSGVLSVARKDRAIAGAVKNLGEETLHITAPDEVRPWLVGALSAHVPLLVVTASGRE
AEDLTAELTAMMGDKVMYYPSWETLPHERLSPGVDIIGQQAKVLHHLDSLDVVVTAARGL
AQPLVNEVTGRDPVTVTVGEDYPFEELIDSLVFRSYSRVDLVAARGEFAVRGGIIDIFPT
TANNPVRVEFWGDEVTEITTFAVADQRTYSDGQLKKVELYPARALPITDEIKKRAEALAR
TYGGNQALAQILGKVAEGISADGMETLIPVLTDSPLVTIVDKLPEGAHVLLVDPERIRTR
VGDLKATDTEFLEAGWELAAMGGDGPVDHKDLDLEPSSYRSLESLEVTAREHEIPLWTLT
PPGMMASDDAETLPLSFGDLVRPRGDEKKISQLMEQLLAHTLAGGAAVYISPQKANCARF
GDKLHERGIAHVQGTEGMKPKAGAVTIYQAFSHNGVVFVPQDSETPLVVVTETDVTGNRV
GDIAGAKRRKAKKRNRVDPLALTAGDYVVHETHGIGRFVKMTEREVRTGDDTSRREYIVL
EYAPSRRGGPPDQLYVPMDSLDLLSKYVGGEKPTVSKMGGADWKKTKKKARSAVKEIAAE
LVDLYAKRRAAPGHAFAPDSPWQAEMEDNFPYVETEDQMLAIDAVKHDMEQPVPMDRVII
GDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHEATFRERMDGFGITIRQLSRFT
PDKQAREIIKGLVDGSVDIVIGTHRLLQTGVQWKDLGLVIVDEEQRFGVEHKEHIKALRA
HVDVLTMSATPIPRTLEMSMSGIREMTTILTPPQDRRPVLTYVGAQEDKQVAAAIRRELL
RDGQVFYVHNRVKSIEERARQLRELVPEARIVVAHGQMSEEQLEKTVQGFWDREFDVLVC
TTIVETGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRERAYAYFLYPKGQVLTETSY
ERLTTIAQNNDMGAGMAVAMKDLEMRGAGNVLGAEQSGHIAGVGFDLYVRLVEEAVEAFR
ALADGKPLDATDQQSAEIRVDLPVDSHIPDDYIASERLRLEIYRKLAASRTEEDLRGVME
EMSDRYGPLPEPVLRLLSVTRLRHLARRAGIVDIALQGTRVKLHPLELPDSKQVRLKRLY
PGSSYRPAAKAVQVKVPKSGAGRVNDKELSDTELVQWVADVIAALCDEEEIDVTGAHSGK
DNKKKKVISVGGGRSSKK
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
gtgccgacgctgagcggtgtgttgtccgttgcacgcaaagatcgggcgatcgcgggggcg
gtgaaaaacctcggggaggaaactctccacatcaccgcgcctgatgaggtgcgcccgtgg
cttgttggtgcgctgtcggcgcatgtgccgttgcttgttgtgacggccagtggccgggag
gcagaagacctcactgcggagcttacagccatgatgggagacaaggtcatgtactacccg
tcatgggagacgctgccacacgagcgcttgagccccggtgtggatatcatcggccagcag
gcgaaagtgcttcaccacctggattccctagacgtggtagttaccgccgcacgaggactc
gcccaacccctggtaaacgaggtgacgggtcgggatccggtgacagttacagtgggggag
gactacccctttgaggagctaatcgattcccttgtctttcgctcctactcccgcgtcgac
cttgttgctgctcgcggtgagttcgccgtgcgtggcggcatcatcgacattttccctaca
accgccaataacccagtgcgcgtggaattttggggcgatgaggtaaccgagatcaccacc
tttgcggtggctgatcagcgcacctattcggatggccaactgaaaaaagtcgagctctac
ccggcgcgcgcgttgccgatcacggatgaaatcaaaaagagagcggaagcgctcgcgcga
acctacggcggcaaccaagcgcttgcacagatcctcggcaaggttgccgagggcatatcg
gcggacgggatggagaccctcatcccggtgctgacggattcaccgctcgtaacaatcgtc
gacaaactgccggaaggcgcgcacgtcctgcttgtagatccagagcggatccggacccgc
gtgggcgacctgaaagcaacagacaccgaattcctcgaagcggggtgggaattggcggcg
atgggaggcgacggccccgtcgaccacaaggatcttgacctcgagccctcgagttaccgc
tccctcgaatcccttgaggtaaccgcgcgtgagcacgaaatcccgctgtggacgttgacc
ccaccggggatgatggccagcgacgatgcggagactcttcccctcagcttcggagacctc
gtacggccacgcggagatgaaaagaagatctcccagctcatggagcagcttctcgcacac
accttagccggaggcgctgcggtctacatctccccacagaaagccaactgtgcccggttt
ggagacaagctccacgagcgaggcatcgcgcatgtccagggcacagagggcatgaagccg
aaggccggagcggtcaccatttaccaggctttttcccacaacggtgtggtgttcgtccca
caggatagcgagacaccgctggttgtggtgacggagacggacgtgaccggtaaccgtgtc
ggcgacatcgccggggcgaagcgtcgcaaagccaaaaagcgcaaccgtgtggacccactg
gcgctgaccgctggcgactatgtcgtgcatgaaacgcacggcattggccggtttgtgaag
atgaccgaacgtgaggtgcgcaccggcgacgacacctcccgccgcgagtacatcgtgctc
gagtacgcacccagcaggcgcggtggccctcccgatcagctgtacgtccccatggactcc
ctcgacctgctcagcaagtacgtgggcggggagaagccgacggtgtccaagatggggggc
gccgattggaagaagacgaagaagaaagcccgcagtgcggtcaaggagatcgcagcggag
ctcgtcgatctgtacgccaaacgtcgcgccgcgccggggcatgcgttcgcgcctgattcc
ccgtggcaggcggagatggaggataacttcccctacgtcgaaaccgaggaccagatgctc
gccatcgacgcagtgaagcacgacatggagcagccggtgcccatggaccgcgtgatcatc
ggtgatgtgggatacggcaaaacggaagttgctgtccgtgcggcgttcaaggcggttcag
gacggcaagcaggtcgcggttcttgtgcccacgacgcttctcgcgcagcagcacgaggcg
acgttcagggagcggatggatggctttggcatcaccatccgccagttgtcgcgcttcacc
cccgacaagcaggcccgcgagattatcaaggggcttgtcgacggctcggtggacatcgtc
atcggtacccaccgtttgctgcagactggtgtgcagtggaaagatctcggtctcgtcatc
gtcgacgaggagcagcgctttggcgtcgagcacaaggagcacatcaaagccctgcgcgca
cacgtcgacgtgctcaccatgtccgccacgccgattccccgcacgctggaaatgagcatg
tccgggatccgtgagatgacgacgatcctcaccccgccgcaagatcgccgcccggtgctt
acctacgtcggcgcgcaggaagacaagcaggtggcggcggcgattcggcgtgagctgctg
cgcgacggccaggtcttttatgtgcataaccgcgtcaagtccattgaggagcgtgcccgc
cagctgcgcgagctcgttcctgaggcgcgcatcgtcgttgcccatgggcaaatgagcgag
gagcagctggaaaaaacggtacagggcttctgggaccgcgaattcgacgtgctcgtgtgc
acgacgatcgtggagaccggattggacatcgccaacgccaacacgctcatcgttgaaaat
gcgcaccacatgggactgtcgcagctgcaccagctgcgcggtcgtgtcggtcgctcccgt
gagcgtgcctacgcatatttcctctaccccaaggggcaggtcttgacggagacctcgtac
gagcggttgactaccatcgcccagaacaacgatatgggtgccggcatggccgtggccatg
aaagatcttgagatgcgaggcgccggcaatgtcctcggtgcggagcaatccggccatatc
gccggagtaggtttcgacctctacgttcgcctcgtggaggaagccgtggaggcgttccgt
gcgctcgccgatggcaagcctctcgacgcgaccgaccagcagtctgctgagatccgcgtg
gacctcccggtggattcccatatccccgacgactacatcgcctcggaacgtctgcgtctg
gaaatctaccgcaagcttgcggcgagccgcacggaggaggacctccgtggcgtgatggag
gaaatgtccgaccgctacggtccgcttcccgaacctgttctcaggctgctcagcgtcact
cgcctgcgccacctggcgcgccgcgcggggattgtggatatcgccctgcaaggcacccgc
gtgaagctgcatccgctggagcttccggattccaagcaggtgcgcctcaagcgcctgtac
ccaggatcctcctaccggccagcagctaaggcagtgcaggtgaaagtgccaaagtctggt
gcaggacgggtgaatgacaaggagctgagcgacacggaactggtccagtgggtggctgat
gtcatcgccgcgctatgcgatgaagaagagatcgatgtgacaggcgcccatagcggaaaa
gataacaaaaagaaaaaggttatttccgtcggcggtggacgtagtagcaaaaagtag
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integrated database retrieval system
