Corynebacterium glutamicum MB001: cgp_1099
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Entry
cgp_1099 CDS
T02791
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor (TRCF)
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cgm
Corynebacterium glutamicum MB001
Pathway
cgm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cgm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
cgp_1099 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cgm03400
]
cgp_1099 (mfd)
Enzymes [BR:
cgm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
cgp_1099 (mfd)
DNA repair and recombination proteins [BR:
cgm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
cgp_1099 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
RecG_dom3_C
UB2H
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
AGT04960
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All DBs
Position
1021962..1025615
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AA seq
1217 aa
AA seq
DB search
MTPMLAGLLKVAATDPKLKGLMSNVGQQHLHITGIDQARPWAIGALAHHAPVLVVTATGR
EAEDLTAELKAMMGDKVAWLPSWETLPHERLSPGVDIVGKRAQVLNHLGDLKVVVAAARA
FCQPVLKDAEGRAPLTLKEGAEFDFSALTTELVFRAYKHVDMVAKRGEFATRGGILDIFP
TTLDYPVRVEFWGDEVSDIRQFSVADQRTIPEITIKSIEIFPARELLITEEVASRAESLI
SKHPGNPTLVEMLSRIADSQDVDGMEALIPALTDTPMVPMLELMPENTHVLVIAPEKVRR
RIADLEATDAEFLMAGWEAAAMGADGPVAAEGLDLEASSYRSYESLEVSASKSDVRWWTF
APPGMFEASEEATLPLDFEAGPAPRGELPKIDAMMAQLLAHTTGGGRAAFIAPTQGAIKR
MVDRFAEKGIPTHVATPGWEPTPGQVTLYHALSHAGLVFPKVRKHRDGAAMPLVVITETD
LTGNRVGDIAGAKRRPAKRRNKVDPLALEPGDLVVHETHGIGRFVKMTERTISAGDETSR
REYIVLEYAPSKRGQPGDQLYVPMDALDMLSRYVGGEKPTLSKMGGSDWKNAKKKARAAV
REIAGELVELYAKRQSAPGHPFAPDTPWQKEMEDNFPYVETEDQMLAIDAVKEDMEKSVP
MDRVIIGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHQSTFEERMTGFPVTIK
GLSRFTSPAESREILSGLAAGSVDIVIGTHRLLQTGVQWKNLGLVIVDEEQRFGVEHKEH
IKALRTHVDVLTMSATPIPRTLEMSMAGIREMTTMLTPPEDRHPILTYVGPYEDKQVAAS
IRRELLRDGQVFFIHNKVADIEKKAREIRDLVPEARVVVAHGQMSEELLEQTVQGFWDRE
YDVLVCTTIVETGLDISNANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGAT
LTEMSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAEQSGHIAGVGFDLYVRLVGE
AVEAYRALADGKVVDGTVKGPKEIRVDLPVDAHIPEKYINAERLRLEIYRKLAQSESEVD
LRLAVEEMEDRYGPIPEEVERLLAVSRLRHLMREAHLTDIAVQGTRIKVHPVDLADSQQV
RLKRLFPGATYRAAAKAIQLSFPKTGNKVTDPLLRDVDLLQWVANFISNMFNLEEIDVRG
PQPGKPKKKSSVISVSL
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
gtgacacctatgctcgcggggctgttgaaggtcgctgcaaccgaccccaagttgaagggg
ttgatgtcgaatgtggggcagcagcatctgcatatcactggcattgatcaggctcgtccg
tgggcgattggtgcgttggcgcatcatgctccggtgttggtggtgactgctactggccgt
gaggctgaggatctcacggctgagttgaaggcgatgatgggcgataaggtggcgtggctt
ccgtcgtgggagactctgccacatgagcgattgagtccgggtgtggacattgtgggcaag
cgtgctcaggtgctcaatcatctaggcgacctcaaagtcgtggtggctgctgcgcgtgcg
ttttgccagccggtactcaaagatgctgaaggtcgtgcacccctcactcttaaagaaggc
gcggagtttgatttctctgccctgaccactgagctggttttccgtgcgtacaagcatgtc
gatatggtggccaagcgcggtgagtttgctacccgcggtggcattttggatattttcccc
accacattggattatccggtgcgtgtggagttctggggcgatgaagtctctgacattagg
cagttctctgtcgccgatcagcgcaccattccagaaatcaccatcaagagcattgagatt
ttcccggcacgggaattgctcattactgaagaagtggcatcgcgtgcggagtctcttatt
tctaagcacccgggcaacccgacgcttgtggagatgctgtcgaggattgcggattcccaa
gatgttgatggcatggaggcgttgattccggcgctgacggatacgccgatggttccgatg
ctggagctcatgccggaaaacacccatgtgttggtgattgctccggagaaggtgcgccga
cgcattgcggatctggaagcaaccgatgctgagtttttgatggctggttgggaagcagct
gcgatgggtgctgatggtccagtggctgcggaaggcctggacttggaagcttctagctat
cgcagttatgaaagtttggaggtttctgcgtcgaaaagcgatgtgcgttggtggactttc
gcgccgccgggcatgtttgaggcctcggaggaggcgacgctgccgcttgattttgaagcc
gggccggcgccgcgcggtgagctgccgaagatcgatgcgatgatggcgcagctgcttgcg
cacacaaccggcggtgggcgggctgcgtttatcgcgccgacccaaggtgcgattaagcgc
atggtcgatcgtttcgcggaaaagggcattcccacccatgtggcgaccccgggttgggag
ccaacgcctggtcaagtgactctttatcatgcgctgagccatgctggcctggtgtttccg
aaggtgcgtaaacaccgcgatggcgctgcaatgccgttggtggttattacagaaaccgat
ctgactggtaaccgtgttggcgatattgcaggggcgaaacgtcgacctgcaaaacgccgc
aacaaggtggatcctttggcgctggagccaggggatttggtggttcatgaaacccacggc
attggtcgttttgtgaagatgactgaacgaaccatttctgcgggtgatgagacctcgcgc
cgtgaatacattgtgctggagtacgcgccatctaagcgcggacagcccggcgatcagctg
tatgtgccgatggatgcgctggatatgctcagccgctacgtcggtggcgagaagccgacg
ctgtccaaaatgggtggttctgactggaagaacgccaagaagaaggctcgcgctgccgtg
cgtgaaatcgccggtgagctggtagaactctacgctaagcgccaatccgcgccgggtcac
ccgtttgcgccggatacgccgtggcaaaaagagatggaagataacttcccctacgttgag
accgaagaccagatgttggcgatcgatgcggtcaaggaggacatggagaaaagtgtcccc
atggaccgcgtcatcatcggcgatgtgggttatggcaagacggaagtggcggtgcgcgcg
gcgttcaaggctgtgcaagacggcaagcaggtagccgttctggtgcccaccacgttgctt
gcgcagcagcaccagtccacgtttgaagagcgtatgactggtttccctgtcaccatcaag
ggattgtcacgctttacttcgcctgcggaatcgcgggagattctctccggtttggctgca
ggatcggtggatatcgtcatcggtactcaccgtttgctgcagactggcgtgcagtggaaa
aacctagggcttgtcattgtggatgaggagcagcgtttcggcgtggaacataaggagcac
atcaaggctctgcgtactcacgtggatgtgctgaccatgtccgcgaccccgattccgcgc
accctggaaatgtccatggccggtatccgtgagatgaccaccatgctcaccccgccggaa
gatcgccacccaattcttacctatgtgggaccgtatgaagacaagcaggtcgcggcatca
attcgccgtgagctgctgcgcgatggccaggtctttttcatccacaacaaggtggcagat
attgagaagaaggcccgcgagatccgcgatctagttcccgaagcccgagtggtcgttgcc
cacggccagatgagtgaagagctgctggaacaaaccgttcaaggtttctgggaccgcgaa
tacgatgtgctggtgtgtaccaccatcgtggaaactggtctggatatttccaacgccaac
acgcttatcgtggaaaatgcccaccacatgggcttgtctcagctgcaccagctgcgtggc
cgcgtgggtcgttcccgtgagcgcggttacgcctacttcctgtatccaaagggcgcgaca
ctgactgaaatgtcctacgaccgcctggcaacgattgcccaaaacaatgatttgggtgcc
ggtatggcggttgccatgaaggatttggaaatgcgtggcgccggcaacgtgctgggtgca
gaacaatcaggccatatcgctggcgtgggctttgacctgtacgttcgcctcgtcggcgaa
gcagtggaagcctaccgcgcgctggctgatggcaaagttgttgatggcaccgtcaaggga
ccaaaggaaatccgcgtggaccttcccgtggatgcccacattcccgaaaagtacatcaac
gccgagcgtctgcgtctggaaatctaccgcaagctcgcgcagtccgaatcggaagtggat
ctgcgccttgcggtggaagaaatggaagaccgctacggtcccattccagaagaagtggag
cgcctgctggctgtgtccagattgcgccacctcatgcgcgaagcccacctcaccgacatt
gcggtgcagggcacgcgcatcaaggtccaccccgttgacctcgccgattcgcagcaagtg
cgcctaaagcgcctgttcccaggcgccacctaccgcgcagccgctaaagcaatccagctg
tctttcccgaagacaggcaacaaggtcacagatcctttgcttcgcgacgtcgacctcctc
cagtgggtagcgaacttcatttccaacatgttcaacttggaggaaatcgatgttcgcgga
ccacaaccaggaaagcctaagaagaaatcatcagtgatctccgtcagcctgtaa
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integrated database retrieval system
