Chryseobacterium gallinarum: OK18_09370
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Entry
OK18_09370 CDS
T03954
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cgn
Chryseobacterium gallinarum
Pathway
cgn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cgn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OK18_09370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cgn03400
]
OK18_09370
Enzymes [BR:
cgn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OK18_09370
DNA repair and recombination proteins [BR:
cgn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OK18_09370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
Choline_kin_N
SBP_bac_3
Latarcin
Motif
Other DBs
NCBI-ProteinID:
AKK72803
UniProt:
A0A0G3M447
LinkDB
All DBs
Position
2082525..2085893
Genome browser
AA seq
1122 aa
AA seq
DB search
MQLKSINEKFLPDLMQKEFGKEIFIRLEDHRHIAVKGSAGSSVSIFVAELFLAQKKSILY
LVDDKEDALYANTEMEDLLGKEKVLYFPATHLEPYQVEKTQNANLVLRTEVLNKINSGRS
PKVIVAYAGALSEKVLKKEDFKAISHHIKVGDHLDFDFVDELLNHYNFHQSDFVSEPGEF
SVRGGIVDVFSYSYEKPYRITFFGNEVESIRTFDIETQLSIDKVKDFQLVSNMNFSVTGS
RVSLLQLLPEESFVVTKNGMVGMQKIRTFYEKALEKYETLSKDIAHRSPQELFISDQEFL
FDYKKFKTIDFGGVLIEGIKDAAEIKMEQMPQPSFHKNFELLIEDLEEKQNDGFDTWISF
STEKQKERLESIFEELEHELPFKSFRSELHEGFVDNGHKLLVYTDHQIFDRYQRYKAKNT
FAKSEQLTLKDLMSLKIGDYIAHIDHGIGKFMGLVKVNNNGKIQECFKLTYKNGDLLYVS
IHSLHKISKYNGPDGKEIVLSKLGSPTWKTLKQKTKAKVKQIAFDLIKLYAQRKTAKGFA
YTPDSYLQNELEASFIYEDTPDQEKATIDVKKDMEADTVMDRLVCGDVGFGKTEVAIRAA
FKAATDGKQVAVLVPTTILAFQHYRSFKERLKDFPVNVSYINRFRTAKQKSETLEELKNG
KVDIIIGTHQLVSSSVKFKDLGLLIIDEEHKFGVSVKDKLKTLKNNVDTLTLTATPIPRT
LQFSLMAARDLSVIKTPPPNRQPVDTQLIDFNEETLRDAISYEIQRDGQVYFINNRIENL
KDIAGLIQRLVPDARVITGHGQMEGKQLEKNVLDFMEGKYDVLVSTTIVESGVDVPNANT
IFINDAHRFGMADLHQMRGRVGRSNRKAFCYLITPPYDMMTTDARKRLEAIEQFSDLGSG
FQIAMKDLEIRGAGDLLGAEQSGFINEMGFETYQKLMQEALEELKDDADFENLFDNEEDR
QKLFKSVKDVNIDTDLELMLPDFYISNTEERLLLYQKIAEITNEKELHQFELELIDRFGP
LPEEAVNLLKSVSLKWLAADIGFEKIVMKNGVFLGYFPGNPQDKFYQTNRFRHIINYLTG
NPAEAQLKEKSGKEGNQLMMRKEKVKNVDEVNRLLKAIIDHE
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgcaattaaaatccatcaatgaaaagtttcttcctgatttaatgcaaaaagaattcgga
aaagagatttttatcaggttagaagatcaccggcatattgctgtaaaaggaagtgcaggg
tcttcggtttctatttttgtggctgagttgtttctggctcaaaagaaaagtattctttat
ctggtagatgataaagaagatgcattgtatgccaacacggaaatggaagatctgcttgga
aaagaaaaggtcctgtatttcccggcaacacatcttgagccttaccaggtagaaaaaacc
cagaatgccaatctggttttgcggaccgaagtactgaacaaaatcaactcgggaagatct
ccaaaggttattgtagcgtacgcaggagccttgtctgaaaaagtattgaaaaaagaagac
tttaaagcgatatcacaccacattaaagtaggggatcatctggattttgactttgtggac
gagctgcttaatcattataattttcatcagtctgattttgtttccgagcctggagagttt
tcagtgagaggaggaattgtagatgtattttcctattcttacgagaagccttatagaatt
accttctttggaaatgaggtggaaagtatcaggacctttgatattgaaacccagctttcc
atagacaaagtgaaagattttcagttggtttccaatatgaatttttcagtaaccggaagc
agggtttctttgctgcaattattgcctgaagaaagttttgtagtaaccaaaaatggtatg
gtgggaatgcagaaaatcagaactttctatgaaaaggcattggagaaatatgaaacatta
agtaaggatatagctcacagaagcccccaggaactttttatttcagaccaggaattcctg
tttgattataagaaatttaaaactatagatttcggtggagtgttgattgaaggaataaaa
gatgccgccgaaattaaaatggaacagatgccgcagccttctttccacaaaaattttgaa
ttgctgattgaagaccttgaagaaaaacaaaatgacgggtttgatacctggatttctttt
tcaacggagaagcaaaaggaacgtctggaatctatttttgaggaactggaacatgaactt
ccttttaaaagcttcaggtctgagctgcatgaaggttttgtagataacgggcataaattg
ttggtctatacggatcaccagatttttgaccgttatcagcgatataaagctaaaaatact
tttgccaaatcagaacagcttaccctgaaagacctgatgtctttaaaaataggagattat
attgctcatatagatcatgggatcggaaaatttatggggctggtaaaagtaaataacaac
ggtaagatccaggaatgttttaaactgacttataaaaacggggatttattgtatgtaagt
atccattccttacataagatttccaagtataatggtcccgatggaaaagaaattgtccta
agtaaactggggtccccgacctggaaaacattaaagcagaaaaccaaggcaaaggtaaaa
cagattgcatttgaccttattaagctatatgcccaaaggaaaacagcaaaaggttttgcg
tataccccggactcctatttgcagaatgaactggaagccagctttatctatgaagataca
ccggatcaggaaaaagcaaccatagacgttaaaaaagacatggaagccgataccgttatg
gataggttggtttgcggagatgtaggttttggaaaaacggaagttgccatccgggctgcg
tttaaagctgcaacagacggaaaacaggttgctgtattggtgccaacaacaattctggcc
ttccagcattacagaagttttaaagagaggctgaaagattttccggtaaatgtttcttat
ataaaccgtttcaggacggcaaaacaaaaatcagaaacattggaagagctgaaaaacggt
aaagtagatatcataataggtactcatcagttggtaagcagttcggttaaattcaaggat
cttgggttattgattattgatgaggaacataagtttggtgtttctgtaaaagataaactg
aaaacgctgaaaaataatgttgatacccttaccctcacagcaactcctattccaagaacc
cttcaattctctttaatggccgcaagggatttgtctgttattaaaacgccaccgccgaac
aggcagccggtagatacccagctgattgattttaatgaagaaacccttcgggatgctatt
tcgtatgagattcaaagggacggacaggtttatttcattaacaacaggattgaaaacctg
aaagatattgccggccttatccaacgtttggttccggatgcaagagtgattacagggcat
gggcagatggaagggaaacagctggaaaaaaatgttttggattttatggaaggaaagtat
gatgttcttgtttccactacaattgttgaaagtggtgtagatgtcccgaatgccaatact
atatttatcaatgatgcgcatcgttttggaatggcagacctgcaccagatgagaggaagg
gtagggcgaagcaacaggaaggcattttgttacctgattacgcctccttatgatatgatg
actacggatgcaagaaaacggttagaggctattgaacagttctcagatttgggaagcggt
tttcagattgcgatgaaagacctggagatccgtggtgcaggagatttattgggtgcagag
cagagtggctttattaatgaaatggggtttgaaacctatcagaagctaatgcaggaagct
ttagaggagcttaaagatgatgctgattttgaaaatttatttgacaatgaagaagacagg
caaaagcttttcaaatctgtaaaagatgtcaatattgatacggatctggagttaatgctt
cctgatttctatatttccaatacggaagaaagattactgttgtatcagaagattgctgaa
attactaatgaaaaggagctgcaccagtttgagcttgagctgattgatcgtttcgggcca
ttgcctgaagaagctgttaatctgttgaaaagtgtttctttgaaatggcttgctgctgat
attggtttcgaaaaaatcgtaatgaaaaacggagtattcttaggatatttcccaggtaat
ccgcaggataagttttatcagacaaacaggttcaggcatattatcaactatttaaccggg
aatccggctgaagctcaattgaaagagaagtcgggtaaagaagggaatcagcttatgatg
agaaaagaaaaggtaaagaatgttgatgaagtgaataggttattaaaagctattattgat
cacgagtaa
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