Cottoperca gobio: 115014007
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Entry
115014007 CDS
T07513
Name
(RefSeq) general transcription factor IIH subunit 2-like
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
cgob
Cottoperca gobio
Pathway
cgob03022
Basal transcription factors
cgob03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cgob00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
115014007
09124 Replication and repair
03420 Nucleotide excision repair
115014007
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgob03021
]
115014007
03400 DNA repair and recombination proteins [BR:
cgob03400
]
115014007
Transcription machinery [BR:
cgob03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
115014007
DNA repair and recombination proteins [BR:
cgob03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
115014007
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
VWA_2
C1_4
VWA
Motif
Other DBs
NCBI-GeneID:
115014007
NCBI-ProteinID:
XP_029296472
Ensembl:
ENSCGOG00000009256
UniProt:
A0A6J2QEP9
LinkDB
All DBs
Position
9:29927613..29940227
Genome browser
AA seq
392 aa
AA seq
DB search
MDEEPERTKRWEGGYERTWEVLKEDESGSLKATVEEILFQSKRKRVVESHGQVRLGMMRH
LHVVIDCSRSMEDKDLKPNRLTSTLKLMETFVDEYFDQNPISQLGIITTKNKRAEKLSDL
AGNPKKHIVALKKAVETVCVGEPSLYNSLNLAIQTLKHMPGHTSREILIILSSLTTCDPA
NICELIKTLKSLKVRVSIIGLSAEVRVCTVLTRETGGSYHVILDESHFKELLMLHVKPLP
ASSSSECSLIRMGFPQHTIASLTDQDAKPSFSMANLDSSSGAGLSLGGYFCPQCHAKYTE
LPVECKVCGLTLVSAPHLARSFHHLFPLQAFLESPMEEIQEDRFCQACQGELKDKSIFTC
PSCCSVFCVECDLFIHDSLHCCPCCIHSQGAP
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagaaccagagagaaccaagcgctgggaagggggctatgaaaggacatgggag
gtgcttaaggaggacgaatctggctcactgaaagccacagtggaagagatcctgttccag
tctaaaaggaaaagggtggtagagagccatggacaagttaggcttgggatgatgcgtcac
ctccatgtggtgattgattgttcaagaagtatggaagacaaggacttgaaaccaaaccgc
ctcacctcaactcttaagctcatggaaacttttgttgatgagtattttgaccaaaacccc
atcagtcagctgggcattatcaccacgaagaataaaagggctgagaagctgtctgacctg
gcaggaaatccaaagaagcacattgttgctctgaagaaagcagtggaaactgtgtgtgta
ggagagccatccctgtacaactctctcaacctggccatacagaccctcaagcacatgcct
ggacacacgagccgggagatccttataatcctcagcagcctcactacatgtgacccggcc
aacatctgtgagctgattaagaccctgaagtctctgaaggtgcgggtgtccattatcggc
ctgtcagcagaagtcagggtgtgtacagtattgaccagggagacgggcggctcgtaccac
gttatcctggacgagagtcacttcaaagagctactgatgctgcatgtcaaacctcttcca
gccagctcctcatctgaatgctctttaatacgcatgggttttcctcaacacaccattgcc
tctctgactgatcaggatgccaagccttcattcagtatggcgaatctggacagcagcagt
ggtgcaggtctgtctctgggaggatacttctgtccgcagtgccacgccaagtacacagag
cttcctgtggagtgtaaagtttgtggtttgactctggtgtcagcgccccatcttgctaga
tccttccaccacctcttccccctccaagcgtttctagagagtcctatggaggagatccaa
gaagacaggttttgtcaagcttgtcaaggggagctgaaagataaaagtatattcacctgt
ccatcatgttgcagtgtgttctgtgtggagtgtgatctcttcatccatgactcgctacac
tgctgcccctgctgtattcacagtcagggagccccatga
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