Cottoperca gobio: 115015139
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Entry
115015139 CDS
T07513
Symbol
upf3b
Name
(RefSeq) regulator of nonsense transcripts 3B
KO
K14328
regulator of nonsense transcripts 3
Organism
cgob
Cottoperca gobio
Pathway
cgob03013
Nucleocytoplasmic transport
cgob03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cgob00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115015139 (upf3b)
03015 mRNA surveillance pathway
115015139 (upf3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgob03019
]
115015139 (upf3b)
Messenger RNA biogenesis [BR:
cgob03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
115015139 (upf3b)
mRNA cycle factors
P-body specific factors
115015139 (upf3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
115015139
NCBI-ProteinID:
XP_029298206
Ensembl:
ENSCGOG00000016423
UniProt:
A0A6J2QKN2
LinkDB
All DBs
Position
10:complement(8231312..8235837)
Genome browser
AA seq
515 aa
AA seq
DB search
MKEDKENARPKERKLEINCEDGEKTEKSKEKKEAMTKIVIRRLPPSLTKEELEEQLQPLP
EMDYLEFFSNDTSLFPHLFARAYINFKNQDDIVLFRDRFDGYVFIDSRGQEYPAVVEFAP
FQKTAKKRSKKKDAKCGTIAEDPDYNKFLELYNGDDDKLASTPETLLEEIEAKSKELVAK
KTTPLLDFLKNKQRIREEKKEERRRRELERKRLRDEERRKWREEERRKRKDNDKMKRLEK
PLDKDKDQVKEEPKIKLLKKPDRGEDADSEKPKEKAKKPERPNKEDRSMGSADHKRRQHI
DNKEDRGRKADEDGRKEFRECDPDRDRERRQREKERFRRQDEDRRRRRERQDENSLRKEK
RDQDVKKDKERALEKKKGEHIGDSSRSERPERSERSERSERSERSERPERPERSERPERS
ERSERPERSERSAKDHRKEESLKRDRLRNKDRPAIQLYQPGARSRNRGGGRGGGGGRGGE
EEEDDEEEEEGGAESNSADRKPDTETEKMADKGDD
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaagacaaggaaaacgctagaccgaaggagagaaaactggaaataaactgtgaa
gatggagaaaagacggagaagtccaaggaaaagaaagaggccatgacaaagattgtgatc
cgaagattaccaccaagtctgaccaaggaggagctggaggagcagttacaacctctccca
gagatggactacctggagtttttctccaacgacacaagccttttccctcacctcttcgca
agggcatacataaacttcaaaaatcaagatgatatagttctcttcagagatcgatttgat
ggttatgtgttcattgacagcagaggacaggagtatcctgccgttgtggagtttgcgcct
tttcaaaagactgccaagaaaagaagtaagaaaaaggacgcaaaatgtggaacaatcgct
gaagatcctgattacaataagtttcttgaactttacaacggcgatgacgacaagttggca
tcaacacctgagaccctgttggaagagattgaggcaaaatcaaaggaacttgtagctaaa
aaaacaactccactgctggacttcctgaagaataaacagagaatcagggaggaaaagaaa
gaagagagaagaaggagggagcttgaacgcaagcgtctgcgtgatgaggagcgtcgtaag
tggagggaggaggagagaaggaagcgcaaagataacgataagatgaagagacttgaaaaa
ccgctcgataaagacaaggaccaagttaaagaagaaccaaagattaagcttctgaagaag
ccagacagaggtgaggatgctgattctgagaagcccaaggaaaaagccaagaaaccagag
aggccaaataaagaggacagatccatggggagtgccgatcataagaggcgtcaacacatt
gacaataaggaggatcgaggaaggaaagcggacgaagacgggaggaaggagttcagggag
tgtgacccagatcgagacagagagcggcggcagagagaaaaggagcgcttcaggcgacag
gatgaagatcggcgaagaaggagagaacggcaggatgagaactccttaaggaaggagaag
agagatcaggatgttaaaaaagataaagagcgtgccttggagaagaaaaaaggtgaacac
attggagactcctctcgctctgagaggccagagaggtccgagaggtccgagaggtccgag
aggtccgagaggtccgagaggccagagagaccagagaggtccgagagaccagagaggtcc
gagaggtccgagaggccagagaggtccgagaggtctgccaaagaccacaggaaggaggaa
agcctgaaaagagatcgactacgaaacaaggatcggcctgcgatccagctttaccagcca
ggggccagaagccgcaatcgaggtgggggaagaggaggaggaggaggaagaggaggagaa
gaagaagaagatgatgaagaagaagaagaaggaggagccgaatccaactctgccgacagg
aagccagatactgagacagagaaaatggctgacaaaggagacgattga
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