Cottoperca gobio: 115016405
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Entry
115016405 CDS
T07513
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XI) chain-like
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
cgob
Cottoperca gobio
Pathway
cgob04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cgob00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
115016405
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cgob00536
]
115016405
Glycosaminoglycan binding proteins [BR:
cgob00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115016405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
115016405
NCBI-ProteinID:
XP_029299982
UniProt:
A0A6J2QRR9
LinkDB
All DBs
Position
12:19736356..19810790
Genome browser
AA seq
2059 aa
AA seq
DB search
MDTHIRWKVKRTIRDAQITLAVILLFVTSQASSVEPADLLKILDFHSLPEGVIKTTGLCS
HRRSTQEPDVAYRVSKDAQLSAPTRQLYPGDVFPEDFSILATVKPKKGSQSFLLSVYNEQ
GIQQLGLEVGRSPVFLYEDHTGKPSPEDYPLFRGVNLADGKWHRVAISVHKETITLILDC
KKKATQKLLRSAHPIIDTKGIVVFGTRILDEEVFEGDIQQLLIVGDHRAAYDYCEHYSPD
CEVPVPDQPQNQDPKINTDALNIDEDNYYYEYPYYEDADGKPDAETKEVKLTDGDRVRST
VEEVLSGKVLTTGSSADSSSSSSSSSSAGSSAGSSAGSSAASSAGSSATATGGGEAYGEE
TSPYDSYDSYNNYDTYYDDTTPSPDTDTSRRVTITSTNVGTGDELDLGAAEKIDMGTGTG
IERHVITSGGGSSITMTTDKTPVGGSQVDYSDGYDYNDGGDFTRVEGADGSSSTVHVSGG
GGSSHVQXGSSSTVHVAGGGGGGGGSSSSSTVHGAGGAGGGGGSSSSSTVHGAGGAGGGG
GSSSSTVHGAGGAGGGGGSSSSSTITIGGGSAGGGSASVGGSSTTGGGSASAGTGAGGSI
ATGTGLGVEGDGDYTDLEDGFKEEHLTNYEDLDSYDVYADLDYGDKERKVLPAETDEYYE
QVNGARGEKGMKGEPAVIEPGMLVEGPSGPEGPTGLPGPPGSSGPPGTSGDSGERGLPGR
SGLPGADGLPGPPGTVLMLPFRMSAGGDSGQKGPAVSAQEAQMQAIMQQARLAMRGPSGP
MGLTGRSGPLGSPGVGGLKGESGDSGPQGPRGPLGSFGPTGKPGRRGRSGADGARGMPGQ
SGPKGDRGFDGLAGLPGEKGHRGDSGPSGPPGGPGEDGERGDDGEIGPRGLPGESGPRGL
LGPKGPQGPSGPPGVTGMDGHSGPKGNIGPQGEPGPPGQQGNPGTQGLAGPQGAIGTPGE
KGPTGKPGLPGMPGADGPPGHPGKEGPNGEKGHLGPAGPQGPIGYPGPRGVKGADGVRGL
KGHKGEKGEDGFPGFKGDLGIKGDRGELGPAGPRGEDGPEGPKGRSGLLGDSGPLGPSGE
KGKLGVPGLPGYPGRQGPKGSQGFQGFPGANGEKGTRGTAGKSGPRGQRGPTGPRGERGP
RGPTGKNGPKGNSGNDGPPGPLGERGLPGPQGPTGFPGPKGPPGPSGKDGLPGHPGQRGE
TGFQGKTGPPGPPGVVGPQGPTGETGPMGDRGHPGPPGPPGEQGLPGAAGKEGAKGDPGP
AGPAGKDGPPGPRGFPGERGLPGPVGAHGLKGSEGPHGPPGPAGSPGERGPAGPAGPTGL
PGRSGPQGPPGPSGEKGGPGEKGPQGPAGRDGIQGPVGLPGPGGPPGPSGEDGDKGELGE
PGQKGGKGDKGEHGPPGPTGPQGPVGAPGPAGADGEPGPRGQQGLFGQKGDEGSRGFPGP
PGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGPPGADGPQGPSGGIGNPGAVGE
KGDAGETGEPGLQGELGPPGSRGERGEKGESGPAGTAGPPGPKGPPGDDGPKGSPGPSGF
PGDPGPPGEPGASGLDGPAGDKGDDGEAGQAGSPGPTGESGPSGPPGKRGPHGIAGPEGR
QGEKGGKGESGMEGPQGKTGPVGPQGSPGKPGSEGLRGIPGPVGEQGLPGSSGPDGPPGP
MGPPGLPGMKGDSGVKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPPGSHGSKGDNGISGP
SGPLGPLGPPGLPGPAGPKGAKGSSGQTGPKGETGTSGPPGPPGPPGDVIHPLPMQSNMK
GRNRRSIDASQVLDDAPADANYKDYDDGMEEIFGSLNSLKLEIEQMKHPMGTQNNPARTC
KDLQLCHPDFPDGDYWIDPNQGCSRDSFKVYCNFTAGGESCIFPDKKSEGARLTSWVKET
PGSWFSEFKRGKLLSYVDAEGNPISVVQMTFMRLLSAAARQNMTYNCYQSVAWHSQDQDN
YDKAIRFLGSNDEEMSYDNNPYIRAVVDGCALKKGYEKTVLEINTPKVEQVPFVDIMFND
FGGSTQKFGFEVGPVCFIG
NT seq
6180 nt
NT seq
+upstream
nt +downstream
nt
atggatacccatataagatggaaagttaaacggacgataagggacgcccaaatcacttta
gcggtgattctgctttttgtcacatcgcaagcaagttcagtggaaccagcagacctcttg
aagattttagattttcacagtttacctgagggtgttataaaaacaacgggtctctgctca
catcggaggtcaacacaagaacctgatgtggcatacagagtatccaaagacgcccagctc
agcgcccccaccagacagctgtatccaggtgatgtgttcccggaggacttttccatcttg
gccacagtgaagcctaagaagggcagccagtccttcctgttgtctgtgtacaatgaacag
ggcatccagcagctcggactggaagtgggccgctcaccagtgttcctgtacgaggaccac
acaggcaaacccagccccgaggactacccgctcttcagaggagtcaacctcgctgacgga
aaatggcatcgagtggcgatcagtgtgcacaaggagaccatcaccctcattctggactgt
aaaaagaaggccacccagaagctgctccgaagcgcccaccccatcatcgataccaaggga
attgtagtttttggaactagaatacttgatgaagaagtctttgagggagacatccagcag
ctattgattgtaggagaccatcgcgctgcctatgactactgtgagcactacagccccgat
tgtgaagtgccagtgccagaccagcctcagaaccaggacccaaagataaacacagatgca
cttaacatagacgaagacaactactattacgaatacccttactatgaggacgccgatggc
aagcctgatgctgagacaaaagaagtgaagcttacagatggagacagagtgaggtccaca
gtggaggaggttttgagcggcaaagtgttgaccaccggctcatccgctgactcatcttcc
agctcatcctccagctcttcggcgggctcttcagcaggctcttcagcgggctcttcggcg
gcctcttcggcgggctcttcggctactgccactggcggaggagaagcctacggagaggag
acaagcccttacgacagctatgacagctacaacaactacgatacttactacgacgacacc
acaccatcgcccgacacggacacctctcgacgcgtcaccatcaccagtaccaatgttggc
accggggacgagctggatctgggagcagcggaaaagattgacatgggtacggggaccgga
atcgaaaggcacgtcatcaccagcggaggaggatcttcaataaccatgaccaccgataag
acaccagtaggcggttcccaagttgactatagcgacggatatgattataacgacggcggc
gatttcacccgtgttgaaggcgctgacggcagcagcagtacagttcatgtcagtggtgga
ggaggcagcagtcacgtgcagtagggcagcagcagtacagtccacgttgcaggtggtgga
ggtggtggaggaggcagcagcagcagcagtacagtccacggtgcaggtggtgcaggtggt
ggaggaggcagcagcagcagcagtacagtccacggtgcaggtggtgcaggtggtggagga
ggcagcagcagcagtacagtccacggtgcaggtggtgcaggtggtggaggaggcagcagc
agcagttctaccatcaccatcgggggtgggtctgccggaggtggttctgcctctgtggga
ggatcttccaccactggagggggatcagccagcgccggcaccggcgcagggggatccatc
gccaccggaacaggactgggtgtggaaggggacggtgactacacggatctggaggatggg
ttcaaggaggagcacctcacaaactatgaggatttagattcctatgacgtctatgcagac
ctcgattatggtgacaaagagcgcaaagtgctgcccgctgagaccgatgagtattatgaa
caggtcaacggagctcgtggtgagaagggaatgaagggagagcctgctgttattgagcct
gggatgttagtggagggtccgtctggccctgaaggcccaacaggtctccccggaccccca
ggttcttctggcccaccaggcacttctggagattctggagagaggggtcttccgggtcgt
agtggtcttcctggcgcggatggtctgccaggaccccctggaactgtcctgatgctgcct
ttcagaatgagcgctggaggtgactctggacagaagggacccgctgtgtcagcgcaggag
gcccagatgcaagccatcatgcagcaggctcggctggcgatgcgcggcccttcaggtcca
atgggtttgactggcagatccggtcctctgggttctcctggtgtaggaggactgaaggga
gaatctggagattcaggtcctcagggaccacgtggacctttgggatcctttggacccact
ggaaagcctggcagaaggggtcgttctggagccgacggtgccaggggcatgccgggacag
tctggacccaagggagaccgagggtttgatggtctggccggacttcctggtgaaaaagga
cacagaggtgactctggcccctctggacctcctggcggtcctggagaggatggagaaagg
ggagatgatggagagatcgggcccaggggacttcctggtgaatcggggccacgtggattg
ctgggaccaaaaggacctcagggaccctctggaccccctggtgtaaccggaatggacggc
cactctggacccaaaggaaacattggacctcaaggagagccgggacctcccggtcagcaa
ggcaacccaggtacccagggactcgcagggccccaaggagccatcggaacaccgggagag
aagggtcctactggaaagccaggcttgccaggaatgccaggagctgatggtccaccgggt
caccctggaaaggaggggcctaatggagagaaaggacacttgggccccgccggccctcaa
ggacccatcggttaccctggaccccgaggcgtgaagggagccgacggtgtgcgcggtctt
aaaggacataagggtgaaaagggagaagacggattccccggcttcaagggagacctgggg
atcaagggcgacaggggagagctcggaccagcgggacccagaggagaagatggtcccgag
ggaccaaagggtcgctcaggtctccttggagattctggacctcttggcccgagtggtgag
aagggtaaacttggagttcccggattgccaggatacccaggaagacaaggaccgaaggga
tctcaaggtttccaaggtttccccggtgccaatggagagaaaggaactcggggaacagca
ggaaagtctggcccacgcggacagaggggaccaacggggcctcgaggagagagaggacca
cgaggaccaacaggaaagaatggaccaaagggtaactcaggaaatgacggcccaccaggt
cctctcggtgagaggggtctgccaggacctcagggaccaactggtttcccaggaccaaag
ggccctcctggaccttcagggaaagacggactgcccggacatcctggacagagaggagag
actggatttcaaggcaagactggccctcccggccctccaggcgtggttggacctcaggga
ccaacaggtgagactggaccaatgggagatcgtggtcatcctggacccccaggcccacct
ggtgagcagggtctacctggagctgcagggaaagaaggagccaagggcgaccccggtcct
gctggcccagcaggtaaggacggtcctcctgggccaagaggtttccccggagagagaggt
ctgcctggccctgtgggggctcacggcctgaaaggaagtgaaggacctcatggcccaccc
ggccctgctggttctcctggtgagcgcggtcctgctggcccagccggacctacaggtctc
cctggacgctctggcccccagggacccccagggccttccggagagaaaggtggaccggga
gagaaaggacctcaaggcccagctggaagagacggtattcagggacctgtgggtctgcca
ggacctggaggaccccctggaccatctggagaggacggagacaagggagagctcggagag
ccgggccagaaaggaggcaagggcgacaaaggagagcatggtccacctggtcccaccggc
cctcaaggacccgttggagcacccggtccagctggtgcagatggagagcccggtcccaga
ggtcagcagggtctgttcggccagaagggagatgaaggatcaagagggttccctggacct
ccaggaccagttgggctgcagggcttgcctggtccacccggtgagaaaggtgaaactgga
gacgttggtcaaatgggtccacccggcccccctggtccccgaggcccctcaggaccccca
ggagccgatggccctcagggaccttccggtggcattggaaaccctggtgctgttggagaa
aagggagatgctggtgaaacaggagagccaggtcttcaaggagaacttggcccaccaggt
tcaagaggagagcgaggagaaaagggagagtccggtccggctggtacagcgggacctccc
ggccctaagggtccccctggagatgatggtcccaaaggcagcccaggtccaagtggtttc
cctggtgaccctggcccacctggagagcccggtgcatctggattagacggtcccgctggt
gacaagggagatgatggagaggctggtcaagctggttcacctggacccactggagagtct
ggtccctccggacctccaggaaagagaggcccccatggaatagcaggacctgagggaaga
caaggagagaagggaggcaagggagaatctggcatggaaggtccccaaggaaagacgggt
cccgttggtcctcaaggatcacccggcaagcccggttctgaaggcctcaggggtatccct
ggcccagttggagagcaaggtctgcctggttcttcaggcccagatggacctcccggacct
atgggtcctcctggtctgcccggtatgaaaggagattctggtgtcaaaggagaaaagggc
catcctggtcttatcggtcttatcggacccccaggtgaacagggggagaagggtgatcga
ggtcttcctggtccaccaggatcacatggttccaaaggagacaatggtatttctggtcct
tcaggtccactcggtcccctcggtcctcctggattacctggtcccgctggtcccaaagga
gctaaagggtcatcgggtcaaactggaccaaagggagagactggtacatccggacctcct
ggccctcctggccctcccggcgatgtcatccacccactccccatgcagtctaacatgaag
ggcagaaaccgtaggagcatcgatgccagccaagtgttggacgacgcgcctgcggacgcc
aactacaaggactacgacgacggcatggaggaaatctttggctcgctcaactccctcaaa
ctggagatcgagcagatgaagcacccgatgggcacgcagaacaacccggcccgcacctgc
aaagacctgcagctctgccaccctgatttccccgatggtgactactggattgatccaaac
cagggctgctctcgggactccttcaaggtttactgcaacttcacagcaggaggagagagc
tgcatcttcccagataagaagtctgaaggggctaggctcacatcctgggtaaaggagact
cccggctcctggttcagtgaattcaaacgtggtaaactgctctcctacgtggatgccgag
ggcaaccccatcagcgtggtccagatgactttcatgcgcctgctgagcgcggcagccaga
cagaacatgacatacaactgctaccagtcggtggcctggcacagccaggatcaggacaac
tacgacaaggccatccgcttcctgggctccaacgatgaggagatgtcttacgataacaac
ccctacatccgcgccgtggtcgatggctgcgcgttgaaaaagggttatgaaaagacggta
cttgagatcaacacgccaaaggtggaacaggtgccatttgtggacattatgtttaacgat
tttggcggctccacgcagaagtttggatttgaagtgggccccgtctgcttcatcggctaa
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