Cottoperca gobio: 115017069
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Entry
115017069 CDS
T07513
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cgob
Cottoperca gobio
Pathway
cgob03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115017069 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgob03019
]
115017069 (mtrex)
03041 Spliceosome [BR:
cgob03041
]
115017069 (mtrex)
03009 Ribosome biogenesis [BR:
cgob03009
]
115017069 (mtrex)
03016 Transfer RNA biogenesis [BR:
cgob03016
]
115017069 (mtrex)
Enzymes [BR:
cgob01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115017069 (mtrex)
Messenger RNA biogenesis [BR:
cgob03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
115017069 (mtrex)
Spliceosome [BR:
cgob03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
115017069 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
115017069 (mtrex)
Ribosome biogenesis [BR:
cgob03009
]
Eukaryotic type
Pre-60S particles
Helicases
115017069 (mtrex)
Transfer RNA biogenesis [BR:
cgob03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
115017069 (mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
115017069
NCBI-ProteinID:
XP_029301120
Ensembl:
ENSCGOG00000008749
UniProt:
A0A6J2QV70
LinkDB
All DBs
Position
12:complement(21914896..21931910)
Genome browser
AA seq
1036 aa
AA seq
DB search
MADAFGDGLFSVFDDEQQTTASKKIPASLTPEIGKVITKNGTEKDAGPSAPIKREADSDG
GEEVLFGKKPRHETVSANDLNLAEFMPQVKVEQIETVEGCSHEVALQASDEYKPLKPRVG
KAAKEYPFVLDPFQREALLCIDNNESVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSP
IKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREVAWVV
FDEIHYMRDLERGVVWEETIILLPDNVHYVFLSATIPNAKQFAEWICHLHKQPCHVVYTE
YRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDSGGNGGGKWDPRGRK
GGTRGPSNVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVAKLDFNREDEKRLVEEVFS
NAVDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETF
AMGINMPARTVLFTSARKFDGKNHRFITSGEYIQMSGRAGRRGMDDRGIVIFMADEKMSP
SVGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRALPGVVEKI
KKYEEQYHGIEIPNEEGVVTYFKIRQQLAKLGKEIQEFTHKPKYCLPFLQPGRLVKVKND
EADFGWGVVVNFCKKSNVKTTTDSEPLYVVEVLVHCSKDSVKDAATEAAKPAAAGESGEM
QVVPVMLHLLTSISSVRLYIPKDLRPFDNRQLMLKSIQEVQKRFPDGVPLLDPVDDMGIK
DPALKKVIQKVEAFEHRMYSHPLHSDPNLESVYSLCEKKALIAADVRTAKRELKKARTVL
QMDKLKCRKRVLRRLGFASPSDVIEMKGRVACEISSGDELLLTEMVFNGLFNDLTVEQAT
ALLSCFVFQENASEMPKLTEQLAAPLRQMQECAKRIAKVSADAKLEVDEETYLNQFKPHL
MDVVFAWANGATFAQICKMTDVFEGSIIRCMRRLEEVLRQMCSAAKAIGNTELENKFAEG
ITKIKRDIIFAASLYL
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcttttggagacgggttgttcagcgtgtttgatgatgaacagcaaactact
gcaagtaaaaagatacccgcttctctgacaccagaaatcgggaaagttattactaaaaat
ggcaccgaaaaagatgctggtccgtctgccccgatcaagagggaggcagacagtgacggg
ggagaggaggtgttgtttgggaagaagcctcgacatgagacggtctctgctaatgaccta
aatcttgcagagtttatgccccaagtgaaggtggagcagattgagactgtagaaggatgc
tcacacgaggtcgccctgcaggccagtgatgaatacaaaccactgaagccacgagtgggg
aaagcagccaaggagtacccttttgttctcgacccgttccagcgcgaggccctcttgtgt
atcgacaacaacgagtctgtgctcgtgtctgctcacacttctgccggcaagaccgtctgt
gccgaatatgccatcgctctggccctgagagagaagcagagagtgatcttcaccagcccc
atcaaagctctgtccaaccagaagtacagagagatgtacgaagagttccaggatgttggg
ctgatgaccggagacgtcaccatcaaccccaccgcctcctgcctcgtcatgacaacggag
atcctgaggagcatgctgtaccgaggctcggagatcatgagggaggtggcgtgggtcgtc
tttgacgagatccattacatgagagatttagagcgtggcgtggtgtgggaggagaccatc
atccttcttccggacaacgtgcattacgtcttcctgtcagccaccatccccaatgccaag
cagtttgcagagtggatttgtcacctacataagcagccgtgccatgtcgtgtacacagaa
taccgtcccactccactgcaacactacatcttcccagcagggggcgatggactccacctg
gttgtggatgagaacggagacttcagagaagacaacttcaacacagctatgcaggtgctg
agagacgcaggggattctgggggcaacggaggcggcaagtgggacccgagaggtcggaaa
ggaggcacgagaggtccatccaacgtgttcaagatcgtgaagatgatcatggagaggaac
ttccagcccgtcatcattttcagcttcagcaagaaggagtgtgaggcctacgctctgcag
gtggccaagctggactttaacagagaggacgagaaacgtctggtggaggaagtgttcagc
aacgcggtggactgtctgtcagacgaggacaagaagctccctcaggtggagcatgtgctg
ccactgttgaagcgggggataggaatccaccacggaggtctgctgcccatcctgaaggag
accatcgagatccttttctccgaaggtctgatcaaggcgctgtttgctacggagacattc
gccatgggcatcaacatgccggctcgcactgtgctcttcaccagcgcacgcaagtttgat
ggcaagaatcaccgctttattacttcaggtgagtacatccagatgtccgggcgagccggg
aggagagggatggacgacaggggaattgttatcttcatggcggacgagaagatgagtcca
tctgtgggcaaacagctgctgaagggctctgcagaccctctgaacagtgccttccacctg
acctacaacatggtgctcaacctgctgcgtgtggaggagatcaacccggagtacatgctg
gagaagtctttctaccagttccagcactacagagctttgcccggcgtcgtggagaagatt
aagaagtatgaggagcagtaccacggcattgagatccccaacgaggaaggtgtggtcact
tactttaagatccgacagcagctcgccaaactgggtaaagagatccaagagttcacccac
aaacccaaatactgcttgcccttcttgcagccggggcgacttgtcaaggtaaaaaatgat
gaggctgacttcggctggggagtcgttgtaaacttctgcaagaagtctaacgtgaagacc
acgacagactctgagccgctgtatgtggtggaggttttagtccactgtagtaaagacagc
gtgaaggatgctgcgaccgaagcagctaaacctgcagctgcaggggagagtggagagatg
caggtggtcccagtgatgctccatctcctgacctccatcagctcagttcgtctttacatc
cccaaagacctgcggcccttcgacaacaggcagctcatgctcaagtctattcaggaggtg
cagaaacgtttcccagatggcgttcctctgctcgaccccgtggacgacatgggcatcaaa
gaccccgcactgaagaaagtcatccagaaagtggaggcctttgagcaccgcatgtactcg
caccccctgcacagcgaccccaacctggagtctgtgtattccctgtgtgagaagaaagct
ctgatcgcagcagacgttcgaacggccaagcgagagctgaagaaagctcgcaccgtcctg
cagatggacaagctgaagtgcaggaagagagttctgcgacgcctcggcttcgccagtccc
tccgacgtcatcgagatgaaggggcgggtcgcctgtgaaatcagcagcggcgacgagctg
ctgctgacggagatggtgttcaacggtctcttcaacgacctgacggtggaacaagccacc
gccctgctgtcctgcttcgtcttccaggagaacgccagcgagatgcccaaactgacggaa
cagctggcggctcctttgagacagatgcaggagtgtgcgaagcgcatcgccaaagtgtct
gcagacgccaagctggaggtggatgaggagacgtacctgaaccagttcaagcctcacctc
atggacgtggtgttcgcctgggctaacggcgccacgttcgctcaaatctgcaagatgacc
gacgtctttgaagggagcatcatccgctgcatgcgtcgcctggaagaagtcctgagacaa
atgtgttctgcagccaaggccatcggcaacacggagctggagaacaagttcgctgaagga
ataacgaagatcaagagagacattatatttgctgccagtctgtatctttaa
DBGET
integrated database retrieval system
